Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_O15
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    28   1.3  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   2.2  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    27   2.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.9  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.9  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   5.1  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    26   5.1  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.1  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    26   6.7  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.9  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   8.9  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 562 LSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRFISGHSTHTPLPSSNSPP 401
           +SS + S +++  S  +  G   PY   N    +SRF++    H       +PP
Sbjct: 460 VSSSSASRFMSKVSSNLNSGNPTPYNSYNGTPTSSRFVAFFDRHRQESEKATPP 513


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 RNMARIYQLAVDLGGRERSLNRCREKSSFLVLKNRPDVVVQYG 228
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 28/90 (31%), Positives = 39/90 (43%)
 Frame = -2

Query: 706 TLPLXFRVHQPXSSIPGFXTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTP 527
           ++PL  R + P S I GF   TTP    +      P  K+F    K        S+Y + 
Sbjct: 306 SIPLNNRPYSPMSEIVGFSGSTTP----LDTYGNRPSGKKFNKNSKFRPPGSTISSYSSA 361

Query: 526 SSLGMAKGVSPPYFQVNDESQASRFISGHS 437
           S+L   +    P  +V+ E Q S F SG S
Sbjct: 362 STL--RRLPRAPGSKVHAERQNSTFNSGIS 389


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 472 ESQASRFISGHSTHTPLPSSNSPPH*RGRHGHKPS 368
           E+ ASR + GH T   L +   P H +  H  +P+
Sbjct: 77  EALASRLLKGHMTQLSLRTILPPAHTKNLHRQQPT 111


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -3

Query: 354 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDKKTAL 175
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K   T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 174 LSASIQASLPSSEIYRQL 121
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 577 GLKPPLSSEAPSAY--LTPSSLGMAKGVSPPYFQVNDESQASRFISGHSTHTPLPSS 413
           G+ P   ++A +A+  LTP   G +   S PY Q   +  + RF     +H P P++
Sbjct: 195 GVDPSTMADAHNAHSSLTPPQSGYSSMPSLPYLQQPFQIPSQRFSRQQQSH-PFPAA 250


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 264 DPSCYFSTPPFDTVLYDNIRTVLKDKKTALL 172
           DP+ Y    PFDTV  D + T    K   L+
Sbjct: 706 DPAAYDKISPFDTVDIDGLTTFAPGKPLTLV 736


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 399 IEEVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCY 250
           I E  + T++A++ Y   +     V H E  LKV  II T  Y  D S Y
Sbjct: 19  ISESRLWTSEALVRYPEIV-----VKHHEEFLKVCDIISTFTYQLDASIY 63


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 511 AKGVSPPYFQVNDESQASRFISGHSTHTPLPSSN 410
           A+  +P     N    AS   +GHS+++PLP S+
Sbjct: 447 AESFNPSISSHNSAEWASGETTGHSSNSPLPGSD 480


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 465 KLRALLVVIPRILRSPPPTHPLIEEV 388
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/79 (22%), Positives = 31/79 (39%)
 Frame = -2

Query: 643  TTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQ 464
            +TP  +S  +N  TP     A    PP++S       TP +       S P       + 
Sbjct: 1629 STPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNS 1688

Query: 463  ASRFISGHSTHTPLPSSNS 407
            ++   S  + +T  P ++S
Sbjct: 1689 STPITSSTALNTSTPITSS 1707


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 189 KKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFG 85
           K T   S +IQ S   S +     DP H  SD+FG
Sbjct: 32  KTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFG 66


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = -2

Query: 700 PLXFRVHQPXSSIPGFXTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLT--P 527
           P+  +     SS+P    P  P  +  S   L        P + PP  S+AP A  +  P
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218

Query: 526 SSLGMAKGVSPPYFQVNDESQASRFISGHSTHTPLPSSNSPP 401
           SS     G +P     N  S++ +F    +    +PS++ PP
Sbjct: 219 SSFAPPAGHAP-----NVTSESPKF---PNRGPSIPSASVPP 252


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -2

Query: 619 SINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQVNDESQASRFISGH 440
           S+NP TP     +P + PP+S+ +P     P S      ++P +  +N+    S+  S  
Sbjct: 271 SLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS--SDGHLAPAFDFLNENPIWSKRFSIS 328

Query: 439 STHTPLPSSNS 407
           S     PS+++
Sbjct: 329 SIKYSAPSTSN 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,646
Number of Sequences: 5004
Number of extensions: 56110
Number of successful extensions: 194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)