Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_O11
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 264 1e-71
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 259 3e-70
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 107 2e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 60 3e-10
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.24
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 2.3
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.3
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.0
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 264 bits (646), Expect = 1e-71
Identities = 115/142 (80%), Positives = 130/142 (91%)
Frame = -2
Query: 556 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 377
P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361
Query: 376 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 197
+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 362 EPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 421
Query: 196 FSEAREDLAALEKDYEEVGMDS 131
FSEAREDLAALE+DYEEVG DS
Sbjct: 422 FSEAREDLAALERDYEEVGQDS 443
Score = 68.5 bits (160), Expect = 1e-12
Identities = 30/44 (68%), Positives = 34/44 (77%)
Frame = -1
Query: 686 FQXXLVLTPRIHFPLVTYAPVIXAEKAYHEQLSVPEITNACFEP 555
FQ LV PRIHFPLVTY+P++ A KA+HE SV EITN CFEP
Sbjct: 259 FQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 259 bits (635), Expect = 3e-70
Identities = 114/142 (80%), Positives = 128/142 (90%)
Frame = -2
Query: 556 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 377
P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357
Query: 376 QPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE 197
+PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGE
Sbjct: 358 RPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGE 417
Query: 196 FSEAREDLAALEKDYEEVGMDS 131
FSEAREDLAALE+DYEEVG DS
Sbjct: 418 FSEAREDLAALERDYEEVGQDS 439
Score = 69.7 bits (163), Expect = 4e-13
Identities = 31/44 (70%), Positives = 34/44 (77%)
Frame = -1
Query: 686 FQXXLVLTPRIHFPLVTYAPVIXAEKAYHEQLSVPEITNACFEP 555
FQ LV PRIHFPLVTYAP++ A KA+HE SV EITN CFEP
Sbjct: 255 FQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 107 bits (256), Expect = 2e-24
Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Frame = -2
Query: 550 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 371
N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + P
Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357
Query: 370 PTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 191
P DL + + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+
Sbjct: 358 PK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFT 409
Query: 190 EAR---EDLAALEKDYEEVGMD 134
EA DL + + Y+E G+D
Sbjct: 410 EAESNMNDLVSEYQQYQEAGID 431
Score = 33.1 bits (72), Expect = 0.046
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -1
Query: 674 LVLTPRIHFPLVTYAPVIXAEKAYHEQLSVPEITNACFE 558
+V PR+HF +V +AP+ + + +SVPE+T F+
Sbjct: 257 MVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 60.1 bits (139), Expect = 3e-10
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Frame = -2
Query: 556 PPNQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 380
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 379 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE- 203
+ P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFED 416
Query: 202 --GEFSEAREDLAALEKDYE 149
EF +R+ +A L +YE
Sbjct: 417 DLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 489 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 355
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 111 EPKSTK 94
EP+ TK
Sbjct: 208 EPRFTK 213
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 598 NSFPSXRSQTHASSPPNQMVKCDPRH 521
N+ PS + ++ S+ PNQ +K P+H
Sbjct: 234 NAPPSIPANSNNSASPNQRIKASPKH 259
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 453 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 367
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 472 WVRRHHGTAYSKPCTCHDGG 531
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 456 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 361
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 534 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 367
+TPV ++ CT TS P T + S P +N +T S TS P
Sbjct: 437 STPVTSTPLATTNCTTSTSVPY--TSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,171
Number of Sequences: 5004
Number of extensions: 57698
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -