Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_O08
         (1112 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.018
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.88 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +3

Query: 813 PPPXXARGGXPPCRXXXPXPSXXPPXXXPPPPPXXXGSXXXGPP 944
           PPP  A     P     P P   P    PPPPP   G    GPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 33.5 bits (73), Expect = 0.054
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = +3

Query: 813 PPPXXARGGXPPCRXXXPXPSXXPPXXXPPPPPXXXGSXXXGPPA 947
           PPP    GG PP           PP   PPPP    G      PA
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPA 796



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 19/65 (29%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
 Frame = +3

Query: 717 PPXPXXXXP-PXRXPVXXXXXFTXXXGPXXXHHPPPXXARGGXPPCRXXXPXPSXXPPXX 893
           PP P    P P   P+          GP     PPP  A  G PP     P  S      
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP-PPPGVAGAGPPPPPPPPPAVSAGGSRY 792

Query: 894 XPPPP 908
             P P
Sbjct: 793 YAPAP 797


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.88
 Identities = 22/87 (25%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
 Frame = +1

Query: 856  SXXPPPXTXRXXDXPPLXXXLTXPXXXXPXXXXXFXXSXXXXPXSPXPLXLXXGG----X 1023
            S   PP      D PP+    T P    P        S    P +P P+           
Sbjct: 1018 SSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077

Query: 1024 XPRXVPXXPXVXSXPPXPGXPXXXXPP 1104
             P   P  P     PP P  P    PP
Sbjct: 1078 APSGAPPVPAPSGIPPVP-KPSVAAPP 1103



 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
 Frame = +3

Query: 813  PPPXXARGGXPPC-RXXXPXPSXXPPXXXPPPPPXXXGSXXXGPPA 947
            PP      G PP  +     P   PP   PP P    G     PP+
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 837 GXPPCRXXXPXPSXXPPXXXPPPPP 911
           G PP     P P   PP   PPPPP
Sbjct: 7   GNPP--PPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 813 PPPXXARGGXPPCRXXXPXPSXXPPXXXPPPPPXXXGSXXXGPPAXR 953
           PPP     G PP        S  PP   PPPP          PP  R
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPP---PPPPRSNAAGSIPLPPQGR 358


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
 Frame = +3

Query: 816  PPXXARGGXPPCRXXXPXPSXXPPXXXPPP--PPXXXGSXXXGPP 944
            PP   +   PP +   P P   P    PPP  PP   G     PP
Sbjct: 1690 PPVRPQSAAPP-QMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 27.1 bits (57), Expect = 4.7
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
 Frame = +3

Query: 813  PPPXXARGGXPPCRXXXPXPSXXPPXXXPP--PPPXXXGSXXXGPP 944
            PP   A    PP     P PS  P    PP  PPP    S     P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,207
Number of Sequences: 5004
Number of extensions: 22243
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)