Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_O04
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    27   2.9  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.6  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   8.8  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = -3

Query: 344 STSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 165
           +T+P  R +  + STN      K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 164 RFRSGGRFC 138
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 260 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 120
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 331 KHVISDPPDPLTVLLGTSSTGH 266
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 426 IKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 337
           I R DT + + S PPVT    ++  WKA+D+
Sbjct: 47  IIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 519 FFSPRKLACFLVCLLAGARSHRTCSV 442
           FF   K+AC L+C +    ++R C+V
Sbjct: 38  FFRRWKIACTLLCSITVILAYRMCAV 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,014
Number of Sequences: 5004
Number of extensions: 46449
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)