Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N23
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    38   0.002
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    28   1.2  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   5.0  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    26   6.6  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   6.6  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 27/92 (29%), Positives = 47/92 (51%)
 Frame = -1

Query: 376 LKTSLSADAIKAXKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISN 197
           L +++  D +K+     KT+ L+  +  +    +++A  L + S  S   I+   D+++ 
Sbjct: 338 LSSNIPNDVVKSGIAMAKTKYLSAFEPVT--LNAISASSLVSASKGSDAFIS-GFDKVTP 394

Query: 196 NDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 101
             IS+ VS+      S  AVGNL  +PY DEL
Sbjct: 395 ASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -3

Query: 539 KWGPDNFLLAKAIGXIXPXAAAGFN--VSYSDNGLFGVVLS 423
           KW   N LLAKA G      A        YSD  L  VV+S
Sbjct: 277 KWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLLSVVIS 317


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 470 FNVSYSDNGLFGVVLSVPKDEA 405
           FN SY+D+GLFG+ +++  D A
Sbjct: 349 FNHSYTDSGLFGMFVTILDDAA 370


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 503 WPLLKENYPAPTLVTGTVXQML 568
           +PLL +NYP P++++  + + L
Sbjct: 62  YPLLNKNYPNPSIISNIIQKAL 83


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 196 YWISGRYPWRCQQQSEQSRCISLALLMIRQATILCRLH-LTLVSSTDF 336
           Y +S  + W CQ  S   R +S A L     ++ C +H   ++ S +F
Sbjct: 304 YCLSQLFNWSCQNISSYQRLVSFAHL-YSYTSVKCLVHWFQIMRSAEF 350


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 40  C*FIKVGNRLRNKLRF 87
           C  IK+GN LRNK RF
Sbjct: 136 CDIIKIGNILRNKERF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,559
Number of Sequences: 5004
Number of extensions: 37134
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)