Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N19
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    31   1.3  
07_03_1751 - 29215074-29216270                                         30   2.3  
08_01_0059 - 394001-394708                                             29   3.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.2  
07_03_0560 + 19479597-19480667                                         28   9.1  
03_02_0765 + 11000724-11002496                                         28   9.1  

>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/42 (30%), Positives = 15/42 (35%)
 Frame = +1

Query: 610 PPPXXXPXXXPXXXXXXPAXPXLSXPTPXPXPXRPXXXXPRP 735
           PPP   P   P      P  P    P+P P   +P    P P
Sbjct: 56  PPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPRPVSPPP 97


>07_03_1751 - 29215074-29216270
          Length = 398

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 17/45 (37%)
 Frame = -2

Query: 743 AXXGRGXXXXGRXGXGXGVGXEXXGXAGXXXXXXGXXXGXXXGGG 609
           A  G G    G  G G G+G    G AG      G   G   GGG
Sbjct: 261 AGAGGGLGAGGGAGGGGGIGGGAGGGAGAGGGFGGGKGGGFGGGG 305



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -2

Query: 734 GRGXXXXGRXGXGXGVGXEXXGXAGXXXXXXGXXXGXXXGGG 609
           G G    G  G G GVG    G AG      G   G   GGG
Sbjct: 186 GGGGGLGGGAGGGAGVGGGAGGGAGGGGGLGGGAGGGAGGGG 227



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -2

Query: 734 GRGXXXXGRXGXGXGVGXEXXGXAGXXXXXXGXXXGXXXGGG 609
           G G    G  G G G+G    G AG      G   G   GGG
Sbjct: 200 GVGGGAGGGAGGGGGLGGGAGGGAGGGGGLGGGAGGGHGGGG 241


>08_01_0059 - 394001-394708
          Length = 235

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +1

Query: 610 PPPXXXPXXXPXXXXXXPAXPXLSXPTPXPXPXRP 714
           PPP   P   P      P+ P    P P P P  P
Sbjct: 11  PPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAP 45



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 613 PPXXXPXXXPXXXXXXPAXPXLSXPTPXPXPXRPXXXXPRP 735
           PP   P   P      P  P  + P P P    P    PRP
Sbjct: 2   PPPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRP 42



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = +1

Query: 610 PPPXXXPXXXPXXXXXX-PAXPXLSXPTPXPXPXRP 714
           PPP   P   P       P  P +S P P P P  P
Sbjct: 36  PPPTPRPYAPPPPSHPLAPPPPHISPPAPVPPPPSP 71


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/42 (30%), Positives = 13/42 (30%)
 Frame = +1

Query: 610 PPPXXXPXXXPXXXXXXPAXPXLSXPTPXPXPXRPXXXXPRP 735
           PPP       P      P  P    P P P P  P    P P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369


>07_03_0560 + 19479597-19480667
          Length = 356

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 734 GRGXXXXGRXGXGXGVGXEXXGXAGXXXXXXGXXXGXXXGGG 609
           G G    G  G G G G    G AG      G   G   GGG
Sbjct: 213 GGGFGGGGGKGGGFGAGGGMGGGAGGGGGLGGGGGGGMGGGG 254


>03_02_0765 + 11000724-11002496
          Length = 590

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 734 GRGXXXXGRXGXGXGVGXEXXGXAGXXXXXXGXXXGXXXGGG 609
           G G    G  G G G G    G AG      G   G   GGG
Sbjct: 203 GLGGGAGGGGGLGGGAGGGLGGGAGGGGGAGGGLGGGAGGGG 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,823,093
Number of Sequences: 37544
Number of extensions: 126144
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)