Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_N17
(947 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 33 0.44
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.58
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.0
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.1
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.1
09_02_0495 + 9880714-9881196 29 5.4
02_04_0242 + 21210062-21210541 29 5.4
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 7.1
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 28 9.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 9.4
03_02_0436 + 8427018-8427707,8429005-8429544 28 9.4
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 32.7 bits (71), Expect = 0.44
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 723 PPPPXXXGGGGXXXXXXXXXXXGAXPPPPP 634
PPPP GGGG PPPPP
Sbjct: 15 PPPPFGRGGGGAGYPRGHKQLYAPPPPPPP 44
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 723 PPPPXXXGGGGXXXXXXXXXXXGAXPPPPP 634
PPPP GGG A PPPPP
Sbjct: 14 PPPPPFGRGGGGAGYPRGHKQLYAPPPPPP 43
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.58
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -3
Query: 732 GGXPPPPXXXGGGGXXXXXXXXXXXGAXPPPPPXXIFFXXXNXXXGXGGGGXXP 571
GG PPPP G GG G PPP G GG G P
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199
Score = 30.3 bits (65), Expect = 2.3
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -1
Query: 728 AAPPPPXXXGGGXXXXXXXXXXXGGXPPPPPXXXFFFXXXTQXRXGGGGXPXP 570
A P PP G G GG P PPP F GG P P
Sbjct: 1135 APPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPP 1187
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 731 GAAPPPPXXXGGGXXXXXXXXXXXGGXPPPPP 636
G APPPP G G G PPPPP
Sbjct: 1096 GVAPPPP-SIGAGAPPPPPPPGGITGVPPPPP 1126
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +1
Query: 577 GXPPPPXRXXVXXXKKNXXXGG-GGGXPPXXXXXXXXXXXPPPXXXGGGGAAP 732
G PPPP + G GG PP PPP GG G P
Sbjct: 1147 GVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPP 1199
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/82 (25%), Positives = 21/82 (25%)
Frame = -3
Query: 879 PPRXXPXXGXXXXXXXXXXXGAXGPXRXPXXXXXXXXGXXXXXXXXXXXGGXPPPPXXXG 700
PP P G G G P G GG P PP G
Sbjct: 1109 PPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAG 1168
Query: 699 GGGXXXXXXXXXXXGAXPPPPP 634
G G PPPPP
Sbjct: 1169 FRG--GTPPPNAHGGVAPPPPP 1188
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 31.5 bits (68), Expect = 1.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -3
Query: 720 PPPXXXGGGGXXXXXXXXXXXGAXPPPPPXXIF 622
PPP GGGG GA P PPP F
Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPF 146
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +2
Query: 581 PPPPX--PXXXLXXKKKXXXGGGGGXAPXXXXXXXXXXXPPPPXXXGGGG 724
PPPP P GGGGG PPPP GGGG
Sbjct: 58 PPPPVVTPTPQCPPPPSYPSGGGGGGG----GGTVMYTSPPPPYSGGGGG 103
Score = 28.7 bits (61), Expect = 7.1
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = -3
Query: 723 PPPPXXXGGGGXXXXXXXXXXXGAXPPPPPXXIFFXXXNXXXGXGGGGXXP 571
PPPP GGGG G PPP G GGGG P
Sbjct: 93 PPPPYSGGGGG-----SSTGGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYP 138
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 637 GGGGGXPP--XXXXXXXXXXXPPPXXXGGGGAAP 732
GGGGG PP PP GGGG AP
Sbjct: 111 GGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = -3
Query: 732 GGXPPPPXXXGGGGXXXXXXXXXXXGAXPPPPPXXIFFXXXNXXXGXGGGGXXP 571
G PP P GGGG G PP G GGGG P
Sbjct: 129 GARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGGGGGGGP 182
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 637 GGGGGXPPXXXXXXXXXXXPPPXXXGGGGAAP 732
GGGG PP PP GGGGA P
Sbjct: 102 GGGGARPPGGGGGGGPPSLPP-GAGGGGGARP 132
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 722 PPPPXXXGGGXXXXXXXXXXXGGXPPPPP 636
PPPP G GG PPPPP
Sbjct: 354 PPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>09_02_0495 + 9880714-9881196
Length = 160
Score = 29.1 bits (62), Expect = 5.4
Identities = 19/66 (28%), Positives = 22/66 (33%)
Frame = -3
Query: 648 PPPPPXXIFFXXXNXXXGXGGGGXXPXXFXXPPXXXXXXXFLXPPXXXXXGFFXXXFXPX 469
PPPPP + G GG + PP F P GF + P
Sbjct: 51 PPPPPAGSSSSSSSGGGDGGAGGLFGGTYPPPPPGVMPGAFAPP---FGGGF---PYGPA 104
Query: 468 PPKXNP 451
PP NP
Sbjct: 105 PPPPNP 110
>02_04_0242 + 21210062-21210541
Length = 159
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 567 KXGGXPPPPXPXLXXXXKKKXXXGGGGGXPP 659
+ GG PPP P L + + GGG G P
Sbjct: 5 RGGGSPPPSLPDLAGGGRGEAGGGGGDGAGP 35
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = -2
Query: 658 GGXPPPPPXXXFFFXXQXXXGXGGGGXPPXFXXXPPPXXXXXXFSXPP 515
GG PP PP + G GG P PPP S PP
Sbjct: 187 GGYPPAPPAQGYPPAAYPPAGYPQGGAYPPPGSYPPPGSYPPQGSYPP 234
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 28.3 bits (60), Expect = 9.4
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -2
Query: 649 PPPPPXXXFFFXXQXXXGXGGGGXPPXFXXXPPPXXXXXXFSXPP 515
PPPPP GGGG PP + PPP PP
Sbjct: 4 PPPPPQAGV---------AGGGGAPPQWGAIPPPVPHQQQQYAPP 39
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +1
Query: 571 GXGXPPPPXRXXVXXXKKNXXXGGGGGXPPXXXXXXXXXXXPPPXXXGGGGAA 729
G G PPPP GGGG PP PPP G AA
Sbjct: 367 GPGPPPPP----------GAAGRGGGGPPPPALPGGPRARGPPPFKKSPGAAA 409
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 28.3 bits (60), Expect = 9.4
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +2
Query: 581 PPPPXPXXXLXXKKKXXXGGGGGXAPXXXXXXXXXXXPPPP 703
PPP P GGGG +P PPPP
Sbjct: 82 PPPAQPVHGAIHHHHNLGGGGGQQSPFFPLLPPLPPQPPPP 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,030,035
Number of Sequences: 37544
Number of extensions: 527230
Number of successful extensions: 1878
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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