Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N13
         (1241 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   5.7  
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     29   7.6  

>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -1

Query: 287  PPPXXXXGAPXXGG--GKXXXXPPXPPPP 207
            PPP    GAP      GK    PP PPPP
Sbjct: 920  PPPPRPPGAPPPPPPPGKPGGPPPPPPPP 948


>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = -3

Query: 285 PPPXXXGGXXX---RGGXXXXXPPXPPPPQ 205
           PPP   GG      RG      PP PPPPQ
Sbjct: 16  PPPFGRGGGGAGYPRGHKQLYAPPPPPPPQ 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,084,623
Number of Sequences: 37544
Number of extensions: 470864
Number of successful extensions: 3773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3061
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3829445508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)