Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N11
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0382 - 22501041-22501279,22501717-22501810                       30   2.0  
09_02_0603 - 11150739-11150746,11150791-11151340                       25   4.5  
11_03_0095 - 9905323-9905793                                           28   8.0  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    28   8.0  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    28   8.0  
01_01_0876 + 6862321-6862398,6862442-6862747                           28   8.0  

>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 539 PPPXXXXXGGGGXXPPPPP 595
           PPP     GGGG   PPPP
Sbjct: 83  PPPSPYYGGGGGYGKPPPP 101


>09_02_0603 - 11150739-11150746,11150791-11151340
          Length = 185

 Score = 25.4 bits (53), Expect(2) = 4.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 530 FXLPPPXXXXXGGGGXXPPPPPXSXF 607
           F LPPP        G  PPPPP S F
Sbjct: 35  FALPPPF-------GFPPPPPPGSTF 53



 Score = 22.2 bits (45), Expect(2) = 4.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 581 PPPPPXSXFF 610
           PPPPP   FF
Sbjct: 62  PPPPPLGSFF 71


>11_03_0095 - 9905323-9905793
          Length = 156

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 591 GGGGXXPPPPXXXXXGGGR 535
           GGGG  PPP      GGGR
Sbjct: 104 GGGGGSPPPSLPDLAGGGR 122


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 539 PPPXXXXXGGGGXXPPPPPXS 601
           PPP      GG   PPPPP S
Sbjct: 930 PPPPPPGKPGGPPPPPPPPGS 950


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 563 GGGGXXPPPPPXS 601
           GGGG  PPPPP S
Sbjct: 55  GGGGWPPPPPPLS 67


>01_01_0876 + 6862321-6862398,6862442-6862747
          Length = 127

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 591 GGGGXXPPPPXXXXXGGGR 535
           GGGG  PPP      GGGR
Sbjct: 5   GGGGGSPPPSLSDLAGGGR 23


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,535
Number of Sequences: 37544
Number of extensions: 254329
Number of successful extensions: 2146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)