Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_N09
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.024
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.17
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.52
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.68
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.1
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 2.8
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 6.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.024
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +3
Query: 624 PPPPPGGXGXXRPPLXXXXXXXPSNPXPPPP---XXXXXPNPPXXXDXXPXXP 773
PPPPP +PP+ P PPPP P PP P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/104 (25%), Positives = 28/104 (26%), Gaps = 12/104 (11%)
Frame = +2
Query: 623 PPPPPR------------GXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSG 766
PPPPPR G PPPP T +P P S PP G
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP-PPLSSSRAVSNPPAPPPAIPG 397
Query: 767 RPXXXPXXXXXXXSXPXPPXXXPXVXXPXXXXPXPPGXXPXXXM 898
R PP P P PP P M
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM 441
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Frame = +2
Query: 623 PPPPPRGXXXXPPPPXXXXXXTPLEPXXPXSP--XXXXPKPPP 745
PP P G PP P PL P +P P PPP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +3
Query: 627 PPPPGGXGXXRPPLXXXXXXXPSNPXPPPPXXXXXPNPP 743
PP P RPP P+ P PPP +PP
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +2
Query: 626 PPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKP 739
PP P PP P PL P P P P P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/86 (24%), Positives = 21/86 (24%), Gaps = 1/86 (1%)
Frame = +2
Query: 623 PPPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXP-KPPPXXXXXSGRPXXXPXXXXX 799
PPPPP PP P P P P S P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 800 XXSXPXPPXXXPXVXXPXXXXPXPPG 877
P P V P P PG
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPG 397
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/84 (25%), Positives = 23/84 (27%), Gaps = 2/84 (2%)
Frame = +2
Query: 626 PPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSGRPXXXPXXXXXXX 805
PP P+ PP P P+ P PP SG P P
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Query: 806 SXP--XPPXXXPXVXXPXXXXPXP 871
P P P V P P P
Sbjct: 1072 EIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 29.5 bits (63), Expect = 0.68
Identities = 20/82 (24%), Positives = 23/82 (28%)
Frame = +2
Query: 626 PPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSGRPXXXPXXXXXXX 805
PP P+ PP P +P P PP +G P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP-PVPVPTAKAP 1237
Query: 806 SXPXPPXXXPXVXXPXXXXPXP 871
P P P V P P P
Sbjct: 1238 PVPAPSSEAPSVSTPRSSVPSP 1259
Score = 27.5 bits (58), Expect = 2.8
Identities = 25/94 (26%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Frame = +2
Query: 626 PPPPR---GXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPK--PPPXXXXXSGRPXXXPXX 790
PP P+ G PPP P P +P P PP + P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV 1109
Query: 791 XXXXXSXP--XPPXXXPXVXXPXXXXPXPPGXXP 886
P PP P V P P P G P
Sbjct: 1110 AVPPVPAPSGAPPVPKPSVAAP--PVPVPSGAPP 1141
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/82 (23%), Positives = 21/82 (25%)
Frame = +2
Query: 626 PPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSGRPXXXPXXXXXXX 805
PP P+ PP P +P P PP P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV-PAPSSGIP 1179
Query: 806 SXPXPPXXXPXVXXPXXXXPXP 871
P P P V P P P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVP 1201
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.52
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 632 PPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPP 745
PP+ PPPP P P P P P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +3
Query: 624 PPPPPGGXGXXRPPLXXXXXXXPSNPXPPPPXXXXXPNPPXXXD 755
P PPP PP P + PPP P+ P D
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGD 1748
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.68
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +2
Query: 623 PPPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSGRPXXXP 784
PPPPP P P P+ P P +P P PPP +G P
Sbjct: 732 PPPPPPAVIVPTPAP------API-PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 609 GXXXXPPPPPGGXGXXRPPLXXXXXXXPSNPXPPPP 716
G PPPPPG G PP P PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP-----------PPPPPP 783
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = -2
Query: 664 GGRXXPXPPGGGGGXXXXPXXKXXXXXXPPPPPXVFLGXXXXWGXGGXAPP 512
GG P PP G G P PPPPP V G + A P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP--------PPPPPAVSAGGSRYYAPAPQAEP 801
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/54 (25%), Positives = 14/54 (25%)
Frame = +2
Query: 623 PPPPPRGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSGRPXXXP 784
P P P PP P P P P PPP G P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = -2
Query: 823 GGXGPGXRRXPTXXXXXGXXGXXSXXXGGFGXXXXXGGGGXGFEGXXXXXXXRGGRXXPX 644
GG G G P G G G GGG GFEG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 643 PPGGGGG 623
G GGG
Sbjct: 251 LGGFGGG 257
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = -3
Query: 783 GXXWGRPXXXXXXGGGLGXXXXGEXGXXGSRGVXXXXXXGGGGXXXXPRGGGGG 622
G GR GG G G G+RG GG G RGG GG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = -3
Query: 783 GXXWGRPXXXXXXGGGLGXXXXGEXGXXGSRGVXXXXXXGGGGXXXXPRGG 631
G GR GG G G G G RG G G +GG
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 6.4
Identities = 22/86 (25%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Frame = +2
Query: 626 PPPP---RGXXXXPPPPXXXXXXTPLEPXXPXSPXXXXPKPPPXXXXXSGRPXXXPXXXX 796
PPPP + PPPP + P P PPP G P
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPP-PMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 266
Query: 797 XXXSXPXPPXXXPXVXXPXXXXPXPP 874
PP P P P PP
Sbjct: 267 EPGEHMPPP---PMHHEPGEHMPPPP 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,806
Number of Sequences: 5004
Number of extensions: 25537
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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