Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N08
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.18 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   0.97 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.97 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
 Frame = -1

Query: 422 PPPXXGGGXXPPP----GGXXPPPXXGPPPPXXXXXNFXFGP 309
           P P  GG   PPP     G  PPP   PPP      +  + P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 419  PPXXGGGXXPPPGGXXPPPXXGPPPP 342
            PP       PPP    PPP   PP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMP 1724


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 392 PPPGGXXPPPXXGPPPP 342
           PPP G  PP    PPPP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -1

Query: 419 PPXXGGGXXPPPGGXXPPPXXGPPPP 342
           PP       PPPG   P     PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 388 PPGGXXPPXXXXPPPPXXXXK 326
           PP G  PP    PPPP    K
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,990
Number of Sequences: 5004
Number of extensions: 21259
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)