Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N08
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.35 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   5.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 389 PPGGXXPPPXXGPPPPXXXXXNFXFGPP 306
           P GG  PP    P PP     N    PP
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPP 431



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = -1

Query: 422 PPPXXGGGXXPPPGGXXPPPXXGPPP 345
           P P        P  G  P P  GPPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -1

Query: 401 GXXPPPGGXXPPPXXGPPPP 342
           G  P PG    PP   P PP
Sbjct: 282 GHHPDPGEVDLPPETQPTPP 301


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 229 GPXXLXPFFCXTPP 270
           GP  + PFFC   P
Sbjct: 50  GPNVINPFFCDMSP 63


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 229 GPXXLXPFFCXTPP 270
           GP  + PFFC   P
Sbjct: 49  GPNVINPFFCDMSP 62


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 383 GGXXPPPXXGPPPP 342
           G    PP   PPPP
Sbjct: 333 GDSDTPPKPAPPPP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,745
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)