Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N05
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    28   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.5  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 729 PRGXXXPGXXGAXXRGGGWRGXXPPXGFXXGSPP 830
           P G    G  G   RG G+    PP GF  G+PP
Sbjct: 109 PLGQAPVGLAGPV-RGVGYTAPPPPAGFGRGAPP 141


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
 Frame = +1

Query: 550  PXPXXXXXXXPLXXPXXXXPXT-PXIXXPPXXPXPXXXXXXXXVPAPAAXXXXTPPXPRX 726
            P P       P+  P    P   P +  PP    P        VP PAA     PP    
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV---PAPSSGIPPVPKPAAGVPPVPPPSEA 1197

Query: 727  PP 732
            PP
Sbjct: 1198 PP 1199


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/63 (26%), Positives = 18/63 (28%)
 Frame = +1

Query: 550 PXPXXXXXXXPLXXPXXXXPXTPXIXXPPXXPXPXXXXXXXXVPAPAAXXXXTPPXPRXP 729
           P P       P   P    P  P +  PP  P P         P P       PP P   
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-------PPPPAVS 786

Query: 730 PGG 738
            GG
Sbjct: 787 AGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,116
Number of Sequences: 5004
Number of extensions: 22312
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)