Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_N05
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.13
07_03_1136 + 24218601-24218734,24218769-24219906 32 0.69
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 0.91
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.1
06_03_0064 + 16134243-16134881 30 2.8
08_02_0309 - 15622877-15623710 29 3.7
07_01_0080 + 587674-588510 29 4.8
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 4.8
12_02_1174 - 26696869-26698191 29 6.4
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 29 6.4
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 8.5
06_03_1310 + 29238644-29240260 28 8.5
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 28 8.5
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 34.3 bits (75), Expect = 0.13
Identities = 26/70 (37%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Frame = +3
Query: 615 PXNSPPXXXPXPPXFXXXXXGSXAGRGSXPDPXXPPXXPRGXXXPG-------XXGAXXR 773
P P P PP S AG GS P P PP P PG GA R
Sbjct: 324 PPAHPAAPAPPPP----APSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGR 379
Query: 774 GGGWRGXXPP 803
GGG G PP
Sbjct: 380 GGG--GPPPP 387
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/85 (27%), Positives = 27/85 (31%)
Frame = +3
Query: 579 SPXPAXXXXSXXPXNSPPXXXPXPPXFXXXXXGSXAGRGSXPDPXXPPXXPRGXXXPGXX 758
+P P + PP P PP G+ AG G+ P P P P
Sbjct: 286 APPPLPPSHHHHHGHHPPPPHPLPPG-----AGAGAGTGAPPPPPAHPAAPAPPPPAPSP 340
Query: 759 GAXXRGGGWRGXXPPXGFXXGSPPG 833
A G G PP PPG
Sbjct: 341 SAAGAGSGPPPPPPPAAPAAPRPPG 365
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Frame = -2
Query: 868 PPAXXGKXXHRDPGGEPXXXPXGGXXPLHPPPRXXA---PXXPGXXXPRGXXGGXXGSGX 698
PPA P P G P PPP A P PG P G G
Sbjct: 324 PPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGG 383
Query: 697 XPRPA 683
P PA
Sbjct: 384 PPPPA 388
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 31.9 bits (69), Expect = 0.69
Identities = 20/64 (31%), Positives = 21/64 (32%)
Frame = -1
Query: 824 GAXXEXPGRXXAPPSXPPXARAXXXRXXXPPGGXRGXGGVXXXXAAGAGTXXXXXKXXGX 645
GA G PPS PP A PGG G GG G G + G
Sbjct: 105 GARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGG-GGGGAPRRVLGGGGGGGALARPPGG 163
Query: 644 GXXG 633
G G
Sbjct: 164 GRGG 167
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 0.91
Identities = 22/76 (28%), Positives = 23/76 (30%)
Frame = +3
Query: 582 PXPAXXXXSXXPXNSPPXXXPXPPXFXXXXXGSXAGRGSXPDPXXPPXXPRGXXXPGXXG 761
P PA P N+ P PP G G P PP P PG G
Sbjct: 1164 PPPAGFRGGTPPPNAHGGVAPPPPP--------PRGHGGVGGPPTPPGAPAPPMPPGVPG 1215
Query: 762 AXXRGGGWRGXXPPXG 809
G RG P G
Sbjct: 1216 GPPPPPGGRGLPAPPG 1231
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/68 (30%), Positives = 21/68 (30%)
Frame = -2
Query: 829 GGEPXXXPXGGXXPLHPPPRXXAPXXPGXXXPRGXXGGXXGSGXXPRPAXEPXXXXXXXG 650
GG P P G PPP P PRG G G P A P G
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGH--GGVGGPPTPPGAPAPPMPPGVPG 1215
Query: 649 GXGXXXGG 626
G GG
Sbjct: 1216 GPPPPPGG 1223
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 826 GEPXXXPXGGXXPLHPPPRXXAPXXPGXXXPRGXXGGXXGSGXXPRPA 683
G P P GG PP P G P GG G P PA
Sbjct: 1120 GVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPA 1167
Score = 28.3 bits (60), Expect = 8.5
Identities = 23/83 (27%), Positives = 27/83 (32%)
Frame = +3
Query: 582 PXPAXXXXSXXPXNSPPXXXPXPPXFXXXXXGSXAGRGSXPDPXXPPXXPRGXXXPGXXG 761
P P+ + P P PP G G + P P P G P G
Sbjct: 1100 PPPSIGAGAPPPPPPPGGITGVPPP---PPIGGLGGHQAPPAPPLPEGIG-GVPPPPPVG 1155
Query: 762 AXXRGGGWRGXXPPXGFXXGSPP 830
GG PP GF G+PP
Sbjct: 1156 GL---GGPPAPPPPAGFRGGTPP 1175
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -2
Query: 868 PPAXXGKXXHRDPGGEPXXXPXGGXXPLHPPPRXXAPXXPGXXXPRGXXGGXXGSGXXP 692
PP P P G P PPP AP PG P G G P
Sbjct: 736 PPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHPP 794
>06_03_0064 + 16134243-16134881
Length = 212
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +3
Query: 675 GSXAGRGSXPDPXXPPXXPRGXXXP-GXXGAXXRGGGWRGXXPPXG 809
G G GS P P PP P G A G+R PP G
Sbjct: 139 GGDGGGGSAPQPRPPPAVPLGVPRQYAAAAAAAAAAGFRRAPPPSG 184
>08_02_0309 - 15622877-15623710
Length = 277
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 679 PAPAAXXXXTPPXPRXPPGG 738
P P+A PP PR PPGG
Sbjct: 72 PPPSATTAPPPPPPRAPPGG 91
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 868 PPAXXGKXXHRDPGGEPXXXPXGGXXPLHPPPRXXAPXXP 749
PP G R P P P G P PPP P P
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPP 118
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = -1
Query: 824 GAXXEXPGRXXAPPSXPPXAR-AXXXRXXXPPGGXRGXGGVXXXXAAGAGTXXXXXKXXG 648
G P APP PP + A + PP G GG G G G
Sbjct: 345 GGPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPPPYHGGGG 404
Query: 647 XGXXGG 630
G GG
Sbjct: 405 GGGGGG 410
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = +3
Query: 687 GRGSXPDPXX--PPXXPRGXXXPGXXGAXXRG--GGWRGXXPPXGFXXGSPP 830
G GS P PP P PG G+ GG+ G P G G+PP
Sbjct: 346 GPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYDGGYGGRPMPGGGGPGAPP 397
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 592 PXXXXPXTPXIXXPPXXPXPXXXXXXXXVPAPAAXXXXTPPXPRXPP 732
P P P PP P P P P PP P PP
Sbjct: 148 PPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPP 194
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Frame = -2
Query: 790 PLHPPPRXXAPXXPGXXX-----PRGXXGGXXGSGXXPRP 686
P PPPR AP PRG GG G G P P
Sbjct: 7 PTPPPPRAPAPWLHSSHRRRVAAPRGAGGGGGGGGAVPPP 46
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -2
Query: 832 PGGEPXXXPXGGXXPLHPPPRXXAPXXPGXXXP 734
PGG P GG P H P + AP P P
Sbjct: 411 PGGGMPPYPPGGNAPPHHPRQEPAPPHPTGGMP 443
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 838 RDPGGEPXXXPXGGXXPLHPPPRXXAPXXPGXXXP 734
R PGG P P H PPR P P P
Sbjct: 370 RRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSP 404
>06_01_0747 -
5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 806 PGRXXAPPSXPPXARAXXXRXXXPPGGXRGXGGVXXXXAAGAG 678
P R PP PP A A PG G G AG G
Sbjct: 27 PRRRAPPPPPPPPADADAASSSRGPGDDEGSGRAGASQEAGGG 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,297
Number of Sequences: 37544
Number of extensions: 303182
Number of successful extensions: 1252
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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