Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_N03
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.69 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    28   1.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.1  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   3.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   4.9  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   4.9  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   4.9  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   6.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   6.4  
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    25   8.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    25   8.5  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 328 ECCGNTGAINYGQFTLPESCCVKKSILSTFAGNNCTVDAANPGC 197
           +C G+     YGQ      C    S++S  AG N T+  A   C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 283 LPESCCVKKSILSTFAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVALGI--ACVEVVG 110
           L  +C    S L  FAG+      A     PKI +   +W  P+  VA+ +  AC+  + 
Sbjct: 342 LTSACSSGNSFL--FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLN 399

Query: 109 A 107
           A
Sbjct: 400 A 400


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +3

Query: 411 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 590
           +PS+ LS   +  +   +     T++  S K    T        A   P+N  T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376

Query: 591 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTNS 689
            +    P T+  V + S  +T    +  +TPI ++S
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSS 412


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 430 ESIMDGVGVLFKKRSDANADEAAEAVFSELQRQ-FECC 320
           ESI+  + V FK+R+D N  E     F EL +Q F  C
Sbjct: 588 ESIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLC 624


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 377 VSVGSLFE*HADAIHNALLDALAVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTA 553
           +SV +  E   DA+  A  +  +V +E++ +  L  DD + +ED + D+ +  +      
Sbjct: 26  LSVSTKEELGDDAL--AAEEGQSVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELE 83

Query: 554 SQERDHEHYSPDDYEDPRTDSK 619
            +E + E  +P+     + +S+
Sbjct: 84  EEEEEEEDATPEPVVTSKKNSR 105


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 416 IHNALL-DALAVGEEEDADHHLHNDDHQQED 505
           +H+ +L D LA     D D  L  D+H Q+D
Sbjct: 56  LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 449 GEEEDADHHLHNDDHQQEDCVRDDH 523
           G ++   HH H+ DH   D    DH
Sbjct: 10  GSDDSTHHHTHDYDHHNHDHHGHDH 34


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 599 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 483
           L SRR  N + +V    WS+  E +H +  RNL   + H
Sbjct: 12  LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 537 RIAPQHPKNAITNITAPTTMKIHG 608
           RI P  P N + NIT P+T+  HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 458 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 595
           E+ +    N + Q+     DDH     +    SQE  HEH    D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -3

Query: 391 RSDANADEAAEAVFSEL--QRQFECCGNTGAINYGQFT--LPESCCVKKSILSTFAG 233
           R D+ +++  +AVF EL  + +FE    +      +    + ES  +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 465 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR 620
           L   C    + K +A +T  Q LSR+   H KN +     P    I  P++R
Sbjct: 95  LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,517
Number of Sequences: 5004
Number of extensions: 50518
Number of successful extensions: 190
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)