Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_N02
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 31 0.97
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 3.0
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.2
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 28 6.9
12_01_0302 - 2286171-2286341,2286747-2286968 28 9.1
02_04_0192 + 20795659-20796309 28 9.1
01_01_0540 + 3957622-3960903 28 9.1
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 79 FYVDSKGVGRNMARIHQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 225
F+VD G G + ++H+LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 282 VSVFDPSCYFSTPPFDTVLYD-NIRTVLK-DNKTALLSASIQAS 157
VS+ D SC TP FDT + + N+ T K + A+L SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 246 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 67
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 66 ILHSF 52
+LHSF
Sbjct: 1408 LLHSF 1412
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 190 NCSSLCIYSSFSPFLR-DLPPVGGSS 116
+CSS +SSFSP L+ + P+GG+S
Sbjct: 266 SCSSSASFSSFSPLLKFEWHPLGGTS 291
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 87 RLQRSRKKHGEDPPTGGRSRRKGEKLE*MQREEQ 188
RL+R RK + D G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>02_04_0192 + 20795659-20796309
Length = 216
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 208 GS*GQQNCSSLCIYSSFSPFLRDLPPVGGSSPCFFRLLWS-LRKILIPYS 62
G G + S SS SPF+ LPP SP F R L S LR +P+S
Sbjct: 33 GGGGSSSSFSSTNSSSSSPFVSFLPPPTSPSP-FHRFLPSPLRASSVPFS 81
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 178 LCIYSSFSPFLRDLPPVGGSS 116
L + SSF PF RD P+GG +
Sbjct: 17 LAVVSSFDPFHRDANPMGGGA 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,207,244
Number of Sequences: 37544
Number of extensions: 303552
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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