Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_M20
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    28   9.7  
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    28   9.7  

>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 612 GGXXXXGRPXXXFGKGXPA-XGGXGARXGGXNXG 514
           GG    G+P    GKG P   GG G + GG   G
Sbjct: 94  GGGGGKGQPKDGGGKGHPKDAGGKGQKGGGGGGG 127


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/53 (33%), Positives = 19/53 (35%)
 Frame = -3

Query: 672 RXXGXPRXXXXXPXXXRXAXGGXXXXGRPXXXFGKGXPAXGGXGARXGGXNXG 514
           R  G PR         R   GG    G P   FG+G  A G  G   GG   G
Sbjct: 64  RNYGAPRDGAGRGGPGRGRGGGRGGRGGPRRDFGEG-DANGFEGGYGGGGGFG 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,760,670
Number of Sequences: 37544
Number of extensions: 148506
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)