Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_M16
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.3
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 5.1
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.1
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 6.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 9.0
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 9.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 9.0
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.3
Identities = 33/136 (24%), Positives = 49/136 (36%), Gaps = 9/136 (6%)
Frame = +1
Query: 214 GATAVNTTTRRRGSPQGRPADGAFE--ANRRL*NVGR----LGTAARRAAQTVPLVSRN- 372
G + NT + G+ P+ F ++ N G+ T AA T L +
Sbjct: 118 GDKSKNTASSATGAATTNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPA 177
Query: 373 -TPLDQNQP-AGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPG 546
T N P A S TP+TG S S GS + T + F+ G+P
Sbjct: 178 ATGTTSNAPPASSTSTTPATGSGGFSFGKPASLGSTNNASTSTTANSGFSFGKPATTSAP 237
Query: 547 RAGVFPPPAPGSTXTD 594
+ P+ T T+
Sbjct: 238 GSNTTVTPSSSITGTN 253
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 397 AGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSG 498
A S R TP+ RS STA R + G +G
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNG 175
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -2
Query: 608 PFPHRSVXVXPGAGGGNTPARPGPCSGGLPPVKV-KGRPEGVRPCGALP 465
P P SV V P P P P S PPV V G P +P A P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKP-SVAAPPVPVPSGAPPVPKPSVAAP 1150
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +1
Query: 490 PSGRPLTFTGGRPPLQGP-GRAGVFPPPAP 576
P P GG PP P G AG PPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 418 PSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAP 576
PS RSN ++AR +A SAP T R + P P + PPAP
Sbjct: 197 PSYVRSNSRSSARSTARSAPRS-TQRSRS---SSANPVTTPPVNNTLLTPPAP 245
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 424 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 290
STV +P+ + ++ + S RPD LP G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182
>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 78
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 421 STGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPP 570
S ++HST S L + R T + G PPL+GP V P P
Sbjct: 3 SNSNTDHSTGDNRSKSEKQTDLRNALRE-TESHGMPPLRGPAGFPVNPRP 51
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 364 SRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGS--APHGLTPSGRPL 507
S NTP + QP + + + ST+ +A S P G P+ L
Sbjct: 33 SSNTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASL 82
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGR 501
G + +A+ P P+ AG+ +G + +T + + + GR
Sbjct: 525 GRSRSKASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQPSNHAYS---EGR 581
Query: 502 PLTFTGGRPP 531
TFTGG+PP
Sbjct: 582 SYTFTGGQPP 591
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 346 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 447
QT P++ N P+ N PA + +TP+ + T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 469 SAPHGLTPSGRPLTFTGGR 525
++P GL P+GRP F GGR
Sbjct: 422 TSPSGLNPTGRPSRF-GGR 439
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.0
Identities = 21/88 (23%), Positives = 32/88 (36%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGR 501
G + TVP S ++ PA T STG S+ + ++ + + P+G
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPAS----TSSTGTSSSPLPSTSTSCTTSTSIPPTGN 350
Query: 502 PLTFTGGRPPLQGPGRAGVFPPPAPGST 585
T P PPPA S+
Sbjct: 351 STTPVTPTVPPTSTSSTSTPPPPASTSS 378
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 391 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 308
G P TP APS G P+ +G++
Sbjct: 95 GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,276
Number of Sequences: 5004
Number of extensions: 53401
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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