Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_M16
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.024
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.024
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.024
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 32 0.51
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.51
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 31 0.68
Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical pr... 31 0.68
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 31 1.2
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 30 1.6
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 30 1.6
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 2.1
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 2.1
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 2.7
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 2.7
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 29 2.7
AC006750-2|AAO38570.1| 478|Caenorhabditis elegans Hypothetical ... 29 2.7
AC006750-1|AAF60535.1| 527|Caenorhabditis elegans Hypothetical ... 29 2.7
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 3.6
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.6
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 3.6
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 3.6
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 3.6
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 3.6
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 3.6
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 3.6
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 29 3.6
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.8
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 4.8
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.8
U61953-14|ABC71811.1| 167|Caenorhabditis elegans Hypothetical p... 28 6.3
U61953-12|AAC48073.1| 348|Caenorhabditis elegans Hypothetical p... 28 6.3
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 28 8.4
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 28 8.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 8.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 8.4
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 8.4
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 8.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 36.3 bits (80), Expect = 0.024
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Frame = +1
Query: 166 TPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NVGRLGTAA 333
+P SPP P G G ++ ++ R RG P+G P G +++
Sbjct: 348 SPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGP 407
Query: 334 RRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTF 513
RR+ T + + P + +P TG S R + P G P+G P T
Sbjct: 408 RRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLP--SRQKRQAPEDRPTGSPPTGSPPT- 464
Query: 514 TGGRPPLQGPGRA 552
GRP GPG++
Sbjct: 465 --GRPHRGGPGKS 475
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +1
Query: 463 AGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAPGS 582
AGS P P G P G PP P AG PPP GS
Sbjct: 234 AGSPPPPPPPKGSPPLAGSGSPP--PPPAAGSPPPPRTGS 271
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 394 PAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRP 504
PAG+G P + + GS P G P+GRP
Sbjct: 323 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 359
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 36.3 bits (80), Expect = 0.024
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Frame = +1
Query: 166 TPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NVGRLGTAA 333
+P SPP P G G ++ ++ R RG P+G P G +++
Sbjct: 369 SPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGP 428
Query: 334 RRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTF 513
RR+ T + + P + +P TG S R + P G P+G P T
Sbjct: 429 RRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLP--SRQKRQAPEDRPTGSPPTGSPPT- 485
Query: 514 TGGRPPLQGPGRA 552
GRP GPG++
Sbjct: 486 --GRPHRGGPGKS 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +1
Query: 463 AGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAPGS 582
AGS P P G P G PP P AG PPP GS
Sbjct: 255 AGSPPPPPPPKGSPPLAGSGSPP--PPPAAGSPPPPRTGS 292
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 394 PAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRP 504
PAG+G P + + GS P G P+GRP
Sbjct: 344 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 380
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 36.3 bits (80), Expect = 0.024
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Frame = +1
Query: 166 TPDVRSPPRSE-PG*GRGATAVNTTTRR---RGSPQGRPADGAFEANRRL*NVGRLGTAA 333
+P SPP P G G ++ ++ R RG P+G P G +++
Sbjct: 354 SPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGP 413
Query: 334 RRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTF 513
RR+ T + + P + +P TG S R + P G P+G P T
Sbjct: 414 RRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTGLP--SRQKRQAPEDRPTGSPPTGSPPT- 470
Query: 514 TGGRPPLQGPGRA 552
GRP GPG++
Sbjct: 471 --GRPHRGGPGKS 481
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/40 (45%), Positives = 18/40 (45%)
Frame = +1
Query: 463 AGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAPGS 582
AGS P P G P G PP P AG PPP GS
Sbjct: 240 AGSPPPPPPPKGSPPLAGSGSPP--PPPAAGSPPPPRTGS 277
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 394 PAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRP 504
PAG+G P + + GS P G P+GRP
Sbjct: 329 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRP 365
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 35.1 bits (77), Expect = 0.055
Identities = 26/68 (38%), Positives = 29/68 (42%)
Frame = +1
Query: 376 PLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAG 555
P D Q G R P G S + A G+ P G G P +F G P GPG G
Sbjct: 256 PADIPQGPGMPRAFPP-GAS--APVAPGMPGAFPPGQGGPGMPGSFPPGAPGPGGPGMPG 312
Query: 556 VFPPPAPG 579
F P APG
Sbjct: 313 SFAPGAPG 320
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 31.9 bits (69), Expect = 0.51
Identities = 27/81 (33%), Positives = 33/81 (40%)
Frame = +1
Query: 325 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRP 504
T A R VP VS L PAG R P+T RS +T A +A P P
Sbjct: 307 TGAARTRPAVPAVSAPRALTSRAPAGPAR--PTTTRS--ATPATRTAVPPRATAPPKAAP 362
Query: 505 LTFTGGRPPLQGPGRAGVFPP 567
+ R P+ P R+ PP
Sbjct: 363 ASKAPTRAPI--PARSAPAPP 381
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.9 bits (69), Expect = 0.51
Identities = 38/134 (28%), Positives = 47/134 (35%), Gaps = 1/134 (0%)
Frame = +1
Query: 184 PPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGTAARRAAQTVPLV 363
PP+ P G GA +G PQG P G+F A + V
Sbjct: 322 PPQGAPQQGFGAPP-------QGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGPPPPVSSA 374
Query: 364 SRN-TPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQG 540
N P Q+ P G+ PS A + G +G P G P PP G
Sbjct: 375 PGNFAPPPQSGPPGAFAPPPSA-----FGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGG 429
Query: 541 PGRAGVFPPPAPGS 582
PG G PP PG+
Sbjct: 430 PGGFGPPPPGGPGA 443
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +1
Query: 376 PLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPH----GLTPSGRPLTFTGGRPPLQGP 543
P Q Q P S+ S+ G AP G PSG P + G PP Q
Sbjct: 256 PPQQQQQQFQAPPPPMASHSSISSTPVQQQGFAPPQQFGGPPPSGPPSEYGGYAPPQQQQ 315
Query: 544 GRAGVFPP 567
+ G PP
Sbjct: 316 QQFGAPPP 323
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 460 SAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAPGST 585
+A + PH P+GRP T +PP R PPAP +T
Sbjct: 999 TAPTPPH--VPTGRPTTVGQAQPPASSSRRVTEVGPPAPRTT 1038
>Z22177-7|CAA80149.1| 171|Caenorhabditis elegans Hypothetical
protein ZK512.8 protein.
Length = 171
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 155 SAFLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSKTSAVSVRQ- 331
S L S+P + DE+ L R + D HP + + +P + E S TSA S
Sbjct: 46 STHLSLASNPTEFKFMDEIALLKRGRIDKDAPKHPYNRRGQQPMMKKEISVTSAHSNSSL 105
Query: 332 PVGPPRRCRWCPGIP 376
PV P G+P
Sbjct: 106 PVRSPAIMTLMGGVP 120
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 31.1 bits (67), Expect = 0.90
Identities = 28/82 (34%), Positives = 35/82 (42%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGR 501
GTA R VP S L PAG R P+T R N + A R + S LT +
Sbjct: 250 GTATRPTRPAVPAASAPRALTSRAPAGPSR--PTTTR-NAAPAPRTAVPSRATVLTKTA- 305
Query: 502 PLTFTGGRPPLQGPGRAGVFPP 567
P + R P+ P R+ PP
Sbjct: 306 PASKAPTRAPV--PARSAPAPP 325
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = +1
Query: 403 SGRDTPSTGRSNHSTAARXSAGSAPHGLT---PSG--RPLTFTGGRPPLQG--PGRAGVF 561
S R +TG + T A SAP LT P+G RP T P + P RA V
Sbjct: 242 SARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVL 301
Query: 562 PPPAPGSTXTDR 597
AP S R
Sbjct: 302 TKTAPASKAPTR 313
>Z83107-5|CAD92390.1| 764|Caenorhabditis elegans Hypothetical
protein F32A7.5b protein.
Length = 764
Score = 31.1 bits (67), Expect = 0.90
Identities = 28/82 (34%), Positives = 35/82 (42%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGR 501
GTA R VP S L PAG R P+T R N + A R + S LT +
Sbjct: 250 GTATRPTRPAVPAASAPRALTSRAPAGPSR--PTTTR-NAAPAPRTAVPSRATVLTKTA- 305
Query: 502 PLTFTGGRPPLQGPGRAGVFPP 567
P + R P+ P R+ PP
Sbjct: 306 PASKAPTRAPV--PARSAPAPP 325
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = +1
Query: 403 SGRDTPSTGRSNHSTAARXSAGSAPHGLT---PSG--RPLTFTGGRPPLQG--PGRAGVF 561
S R +TG + T A SAP LT P+G RP T P + P RA V
Sbjct: 242 SARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVL 301
Query: 562 PPPAPGSTXTDR 597
AP S R
Sbjct: 302 TKTAPASKAPTR 313
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 31.1 bits (67), Expect = 0.90
Identities = 28/82 (34%), Positives = 35/82 (42%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGR 501
GTA R VP S L PAG R P+T R N + A R + S LT +
Sbjct: 250 GTATRPTRPAVPAASAPRALTSRAPAGPSR--PTTTR-NAAPAPRTAVPSRATVLTKTA- 305
Query: 502 PLTFTGGRPPLQGPGRAGVFPP 567
P + R P+ P R+ PP
Sbjct: 306 PASKAPTRAPV--PARSAPAPP 325
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Frame = +1
Query: 403 SGRDTPSTGRSNHSTAARXSAGSAPHGLT---PSG--RPLTFTGGRPPLQG--PGRAGVF 561
S R +TG + T A SAP LT P+G RP T P + P RA V
Sbjct: 242 SARPATTTGTATRPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAVPSRATVL 301
Query: 562 PPPAPGSTXTDR 597
AP S R
Sbjct: 302 TKTAPASKAPTR 313
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 388 SGPAGYSGTPAAPSGRPDGLPYRDG 314
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 400 GSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQ-GPGRAGVFPPPAP 576
GSG PS S+ S A + GSA S PL+F G P + GP +G F PA
Sbjct: 638 GSGH-VPSDFGSSPSDLAPAAPGSASSQPGLSDGPLSFGSGNAPSEFGPVPSGSFGSPAG 696
Query: 577 GSTXTDRCGKG 609
+ G G
Sbjct: 697 SNNGLVSFGSG 707
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 578 PGAGGGNTPARPGPCSGGLPPVKVKGRP 495
PG GGG P GP + PP K +GRP
Sbjct: 631 PGGGGGGGPT--GPPAPPKPPAKPRGRP 656
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 578 PGAGGGNTPARPGPCSGGLPPVKVKGRP 495
PG GGG P GP + PP K +GRP
Sbjct: 631 PGGGGGGGPT--GPPAPPKPPAKPRGRP 656
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 388 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 308
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 409 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 314
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 409 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 314
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -3
Query: 409 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 314
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +1
Query: 325 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRP 504
T A + T P V R T + N P S+ + ST+A + SAP P
Sbjct: 1925 TQALAKSATTPRVGRKTTENNNDPVRPVAVAVSSPAATPSTSASVTVTSAPATSVPEPNV 1984
Query: 505 LTFTGGRPPLQGPGRA----GVFPPPAP 576
+ P+ GP A PPPAP
Sbjct: 1985 VV-----EPIPGPTSAREERNDVPPPAP 2007
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Frame = +1
Query: 355 PLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPL 534
P N GS P TG G P P G P TGG PP
Sbjct: 687 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP-PITGGPPPP 745
Query: 535 QGPGR----AGVFPPPAP 576
PG +G PPP P
Sbjct: 746 PPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Frame = +1
Query: 355 PLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPL 534
P N GS P TG G P P G P TGG PP
Sbjct: 687 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP-PITGGPPPP 745
Query: 535 QGPGR----AGVFPPPAP 576
PG +G PPP P
Sbjct: 746 PPPGGLPPISGGPPPPPP 763
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 388 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 308
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/78 (30%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Frame = +1
Query: 355 PLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPL 534
P N GS P TG G P P G P TGG PP
Sbjct: 270 PPTKMNLSAPSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLP-PITGGPPPP 328
Query: 535 QGPGR----AGVFPPPAP 576
PG +G PPP P
Sbjct: 329 PPPGGLPPISGGPPPPPP 346
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 406 GRDTPS--TGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAPG 579
G+D PS G T A P P G P T G P L GP + PP PG
Sbjct: 208 GKDGPSGDPGLRFIKTPGPVGAAGPPGPPGPPGSPGENTEGAPGLDGP----LGPPGKPG 263
Query: 580 STXTD 594
+ TD
Sbjct: 264 TPGTD 268
>AC006750-2|AAO38570.1| 478|Caenorhabditis elegans Hypothetical
protein Y39F10B.1b protein.
Length = 478
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 313 GRLGT--AARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGL 486
G++G+ + + +P+ + TP+D N G G D STGR ++ + ++
Sbjct: 204 GKIGSKLGLKDKEKPLPVGTFLTPMD-NHLDGGGNDYDSTGRGTSRNSSFNAYDTSAQNN 262
Query: 487 TPSGRPLTFTGGRPP 531
PS P +F+ + P
Sbjct: 263 GPSRPPSSFSSNQNP 277
>AC006750-1|AAF60535.1| 527|Caenorhabditis elegans Hypothetical
protein Y39F10B.1a protein.
Length = 527
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 313 GRLGT--AARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGL 486
G++G+ + + +P+ + TP+D N G G D STGR ++ + ++
Sbjct: 253 GKIGSKLGLKDKEKPLPVGTFLTPMD-NHLDGGGNDYDSTGRGTSRNSSFNAYDTSAQNN 311
Query: 487 TPSGRPLTFTGGRPP 531
PS P +F+ + P
Sbjct: 312 GPSRPPSSFSSNQNP 326
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/65 (36%), Positives = 25/65 (38%)
Frame = +1
Query: 385 QNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFP 564
Q A +G P G S AA SAP TPS RP PPL P A P
Sbjct: 800 QRHRAAAGSVPPGPGAQPRSGAA-----SAPSRTTPSARP-----SAPPLVAPQVAVAVP 849
Query: 565 PPAPG 579
P G
Sbjct: 850 PGVVG 854
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 388 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 302
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 424 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 314
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTA 450
GT A + + ++ TPL + + R+ PSTGR STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 325 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPS 495
TA ++ TVP S P Q+ +G TPS S + + + S P G + S
Sbjct: 374 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQS 430
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 325 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPS 495
TA ++ TVP S P Q+ +G TPS S + + + S P G + S
Sbjct: 581 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQS 637
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 325 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPS 495
TA ++ TVP S P Q+ +G TPS S + + + S P G + S
Sbjct: 581 TATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPTGSSQS 637
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 385 GPAGYSGTPAAPSG-RPDGLPYRDG 314
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 406 GRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFPPPAP-GS 582
GR T S+ S+ S++ G+TP PL + G PP G G PPP P G+
Sbjct: 3 GRRTCSSSSSSSSSSDGSYRSPVGFGVTPI-MPLPY-GAPPPPVGAGVGYAPPPPRPYGA 60
Query: 583 T 585
T
Sbjct: 61 T 61
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 385 GPAGYSGTPAAPSG-RPDGLPYRDG 314
GP+G SG PA P PDG P R G
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPG 150
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -3
Query: 385 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 293
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/65 (36%), Positives = 25/65 (38%)
Frame = +1
Query: 385 QNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGGRPPLQGPGRAGVFP 564
Q A +G P G S AA SAP TPS RP PPL P A P
Sbjct: 800 QRHRAAAGSVPPGPGAQPRSGAA-----SAPSRTTPSARP-----SAPPLVAPQVAVAVP 849
Query: 565 PPAPG 579
P G
Sbjct: 850 PGVVG 854
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 385 GPAGYSGTPAAPSGRP--DGLPYRDGRR 308
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Frame = +1
Query: 370 NTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSG-RPLTFTGGRPPLQGPG 546
N P D N+P SG + PS +P G +P+G P + P GP
Sbjct: 969 NGPSDPNKPGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPS 1028
Query: 547 RAGVFPP-PAP 576
G P P+P
Sbjct: 1029 PNGPTPNWPSP 1039
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 578 PGAGGGNTPARPGPCSGGLPPVKVKGRPEGVRPCGALP 465
PG G N P+ P S P VK P G P G P
Sbjct: 977 PGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSP 1014
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 385 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 287
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>U61953-14|ABC71811.1| 167|Caenorhabditis elegans Hypothetical
protein R08C7.2c protein.
Length = 167
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 122 RYFRAHPLNDSS---AFLHPTSDPLRGQNPDEVGG 217
R F+ PLND + AF + T P +NP EVGG
Sbjct: 17 RKFKNPPLNDGNLCDAFNNTTKPPNWSKNPCEVGG 51
>U61953-12|AAC48073.1| 348|Caenorhabditis elegans Hypothetical
protein R08C7.2a protein.
Length = 348
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 122 RYFRAHPLNDSS---AFLHPTSDPLRGQNPDEVGG 217
R F+ PLND + AF + T P +NP EVGG
Sbjct: 198 RKFKNPPLNDGNLCDAFNNTTKPPNWSKNPCEVGG 232
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Frame = +1
Query: 322 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLT-PSG 498
G AA R P R P + + G+ P + + P G P+G
Sbjct: 179 GGAAPRPGPPGPKGPRGAPGNSGRAGAPGQ--PGNDAHGYGGGVGAPGPAGPRGAPGPAG 236
Query: 499 RPLTFTGGRPPLQGP-GRAGVFPPPAP 576
P + GGRP GP G G P P
Sbjct: 237 HPGSSGGGRPGPAGPKGAPGQPGRPGP 263
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 311
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +1
Query: 376 PLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPH----GLTPSGRPLTFTGGRPPLQGP 543
P Q P G G+ SN G AP+ G P F+GG+ P
Sbjct: 37 PQQQPYPGGGGQPPYPGSNSNQGGGGYPGQGGAPYPGGSGGYPQAPQYGFSGGQGSAPQP 96
Query: 544 GRAGVFPP 567
+ G +PP
Sbjct: 97 NQGG-YPP 103
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +1
Query: 376 PLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPH----GLTPSGRPLTFTGGRPPLQGP 543
P Q P G G+ SN G AP+ G P F+GG+ P
Sbjct: 79 PQQQPYPGGGGQPPYPGSNSNQGGGGYPGQGGAPYPGGSGGYPQAPQYGFSGGQGSAPQP 138
Query: 544 GRAGVFPP 567
+ G +PP
Sbjct: 139 NQGG-YPP 145
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Frame = +2
Query: 170 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRR------------IEGSKTS 313
P PL P + G + S+ QP + P+ QPT PSR I+ S
Sbjct: 7 PVKQPLPDSPPTDEG-MSSSSAQPSAPSAPEQ-QPTSPSRPPPPAGFVYPSTDIQNSSEV 64
Query: 314 AVSVRQPVGPP 346
VS P GPP
Sbjct: 65 HVSAPVPAGPP 75
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 343 AQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGG 522
A TVP V+ TP + T +T ++ +T + P +TP+ RP+T
Sbjct: 675 APTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPAS 730
Query: 523 RPPLQ 537
+P Q
Sbjct: 731 QPATQ 735
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 343 AQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGG 522
A TVP V+ TP + T +T ++ +T + P +TP+ RP+T
Sbjct: 731 APTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPAS 786
Query: 523 RPPLQ 537
+P Q
Sbjct: 787 QPATQ 791
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 343 AQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGSAPHGLTPSGRPLTFTGG 522
A TVP V+ TP + T +T ++ +T + P +TP+ RP+T
Sbjct: 554 APTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPAS 609
Query: 523 RPPLQ 537
+P Q
Sbjct: 610 QPATQ 614
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 406 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 311
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,781
Number of Sequences: 27780
Number of extensions: 384294
Number of successful extensions: 2048
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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