Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_M13
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.47 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 845 KKXPPPPPPXXKKKXXPPL 789
           K+ PPPPPP  + +  PP+
Sbjct: 309 KRPPPPPPPSRRNRGKPPI 327



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 844 KKXPPPPPPXXKKKXXPP 791
           KK PPPPPP  ++    P
Sbjct: 308 KKRPPPPPPPSRRNRGKP 325



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 671 PPXXFWGGXAPPPXKXKXTPPPPP 742
           PP     G  P P + +  PPPPP
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPP 365


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 835  PPPPPPXXKKKXXPP 791
            PPPPPP    K  PP
Sbjct: 1882 PPPPPPMALPKAGPP 1896


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
 Frame = +2

Query: 671 PPXXFWGGXAPPPXKXKXT----PPPPP 742
           PP    GG  PPP          PPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,744
Number of Sequences: 5004
Number of extensions: 20823
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)