Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_M05
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0581 - 30386018-30386440                                         29   4.4  
08_01_0955 + 9478018-9478773                                           28   7.7  
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911...    28   7.7  

>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 SGVRSQVLERLEMRLRSGGGGARRQ 344
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>08_01_0955 + 9478018-9478773
          Length = 251

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 379 CXXAALVCRV-QRCRRAPPPPLRS 311
           C  AA  CR   RCRRA PPP  S
Sbjct: 105 CTRAAPRCRCPSRCRRAAPPPSSS 128


>01_03_0056 +
           12089404-12090300,12090429-12090581,12090999-12091157,
           12091575-12091734,12092185-12092201,12092682-12092798,
           12092914-12093303
          Length = 630

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 535 PRXXPKQDPPXETRPPXR 588
           P   P QDPP E RPP R
Sbjct: 87  PPRRPPQDPPLEQRPPAR 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,877
Number of Sequences: 37544
Number of extensions: 237321
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)