Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_M02
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 121 ESIPDRGTWRSGSDFVSCV 65
           +++PDRG W S  +F+  V
Sbjct: 14  KTLPDRGMWSSKIEFILSV 32


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 121 ESIPDRGTWRSGSDFVSCV 65
           +++PDRG W S  +F+  V
Sbjct: 67  KTLPDRGMWSSKIEFILSV 85


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 335 LPLAKTRCRYLLKMTSLPTI 394
           +PL K   +Y+LK T  P +
Sbjct: 325 VPLKKVNSKYILKSTLTPKL 344


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 583 VTGCEXVDLFTRHGADYRLVDI 518
           V GC     F R G DY L +I
Sbjct: 8   VLGCTRSAHFARPGGDYSLDEI 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,882
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)