Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_M01
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0142 - 940421-940701,941262-941574 34 0.14
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.14
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.55
12_02_0299 - 17051570-17052474,17053542-17053755 31 0.73
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.3
12_01_0302 - 2286171-2286341,2286747-2286968 29 3.9
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.9
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.1
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.1
02_05_0700 + 31018480-31019832 28 9.0
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Frame = -3
Query: 698 PXXXNPGFXXPXPPXXKXPFPXX-PXPRXXKGFGPGXNPPXXNQGXPXGYLTPXSXGQG* 522
P P P PP P P P P PG PP P GY P Q
Sbjct: 31 PHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGGYPQH- 89
Query: 521 KGFPPXIFKGKENHK 477
G+PP + G H+
Sbjct: 90 GGYPPAGYPGSSGHQ 104
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -3
Query: 704 KXPXXXNPGFXXPXPPXXKXPFPXXPXPRXXKGFGPGXNPPXXNQGXP 561
K P P P PP K P P P P K GP PP P
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = -2
Query: 681 GVXKXXPPXXKXPXPXXPXTPKXXGXWP-RXKPPGXXSRGXXGVFNPLVXGAGVKGVSPP 505
G PP P P P P+ G P PPG RG G P + G PP
Sbjct: 344 GAGSGPPPP---PPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPP 400
Query: 504 YFQGKGESQAS 472
+ + G + A+
Sbjct: 401 FKKSPGAAAAA 411
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = -3
Query: 728 PXPXMGGKKXPXXXNPGFXXPXPPXXKXPFPXXPXPRXXKGFGPGXNPPXXNQGXP 561
P P G P P P P P P P G G G PP G P
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALPGGP 393
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 31.5 bits (68), Expect = 0.73
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = -3
Query: 728 PXPXMGGKKXPXXXNPGFXXPXPPXXKXPFPXXPXPRXXKGFGPGXNPPXXNQGXP 561
P P + P P F P PP P P P P F P PP P
Sbjct: 243 PLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFP 298
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Frame = -3
Query: 728 PXPXMGGKKXPXXXNPGFXXPXPPXXKXPFP------XXPXPRXXKGFGPGXNPPXXNQG 567
P P M GKK P P P PP P P P P KG PP +G
Sbjct: 752 PPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHPPSSKGLNAPAPPPLLGRG 811
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 95 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 196
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = -3
Query: 722 PXMGGKKXPXXXNPGFXXPXPPXXKXPFPXXPXPRXXK-GFGPGXNPPXXNQGXP 561
P G P P F P PP P P P P + FGPG PP Q P
Sbjct: 36 PAYGHMPPPQGAPPPFLAPPPP----PPPGPPPPHQPQFNFGPG--PPQQQQPPP 84
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 87 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 233
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 254 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 75
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 74 ILHSF 60
+LHSF
Sbjct: 1408 LLHSF 1412
>02_05_0700 + 31018480-31019832
Length = 450
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = -3
Query: 722 PXMGGKKXPXXXNPGFXXPXPPXXKXPFPXXPXPRXXKGFGPGXNPPXXNQGXP 561
P + G+ P PG P P P P P P P P Q P
Sbjct: 24 PPLAGENLPGQLLPGEKPPGQPLPGQPLPGQPLPGQSLPGQPLPGQPLPGQSLP 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,012
Number of Sequences: 37544
Number of extensions: 364982
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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