Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_M01
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    32   0.37 
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    32   0.37 
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    32   0.49 
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   8.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   8.0  

>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 662 PPXXKXPFPXXPXPRXXKGFG-PGXNPPXXNQGXPXGYLTPXSXGQ 528
           PP    P+P  P P+  +G+G P    P      P G + P   GQ
Sbjct: 713 PPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHGQ 758


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 662 PPXXKXPFPXXPXPRXXKGFG-PGXNPPXXNQGXPXGYLTPXSXGQ 528
           PP    P+P  P P+  +G+G P    P      P G + P   GQ
Sbjct: 713 PPYQAQPYPGPPPPQQQRGYGYPPPPQPGHPYQQPYGQMPPPPHGQ 758


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/56 (30%), Positives = 18/56 (32%)
 Frame = -3

Query: 722  PXMGGKKXPXXXNPGFXXPXPPXXKXPFPXXPXPRXXKGFGPGXNPPXXNQGXPXG 555
            P   G   P   +P    P  P    P P  P P      GP  N P  N   P G
Sbjct: 991  PSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNG 1046


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
 Frame = -2

Query: 663 PPXXKXPX--PXXPXTPKXXGXWPRXKPPGXXSR---GXXGVFNPLVXGAGVKGVSPPYF 499
           PP  + P   P  P         PR  PPG  +    G  G F P   G G+ G  PP  
Sbjct: 243 PPGPQVPGSYPSGPADIPQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPPGA 302

Query: 498 QGKG 487
            G G
Sbjct: 303 PGPG 306


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -3

Query: 602 GPGXNPPXXNQGXPXGYLTPXSXG-QG*KGFPPXIFKG 492
           GP   P   NQG P GY  P   G    +G PP    G
Sbjct: 83  GPSGPPVYHNQGPPRGYPPPPPQGADTWRGAPPPAHHG 120


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 24/83 (28%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
 Frame = -3

Query: 728 PXPXMGGKKXPXXXNPGFXXPXP---PXXKXPFPXXPXPRXXKGFGPGXNPPXXNQG-XP 561
           P P + G   P    PG   P P   P         P P   +GF  G  PP   +G  P
Sbjct: 708 PPPGIPGYP-PAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGP 766

Query: 560 XGYLTPXSXGQG*KGFPPXIFKG 492
                P   G      PP  F+G
Sbjct: 767 MSSFPPPPRGGMHHMPPPPSFRG 789


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,065
Number of Sequences: 27780
Number of extensions: 276114
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)