Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L23
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   1.2  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +1

Query: 505 PPXG--GXXXPPPPPXXGXKKKKK 570
           PP G      PPPPP  G  KK+K
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 24.6 bits (51), Expect(2) = 1.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 529 PPPPPXXGXKKKKKK 573
           PPPPP    KK+K K
Sbjct: 25  PPPPPPGYVKKRKNK 39



 Score = 21.8 bits (44), Expect(2) = 1.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 508 PXGGXXXPPPPP 543
           P G    PPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = -1

Query: 167 FXXSPXGPGEFXXXXXXKAXICLXXQVPGXXLDYPLRGGPKLKRGTPS 24
           F   P G   F       A + L   +PG  L  P R  P+LK  TPS
Sbjct: 7   FSKFPVGSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPS 54


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/69 (21%), Positives = 18/69 (26%)
 Frame = +2

Query: 419 PPXGGGXXKXFXXXXXXGGXAXXXXXXXXPPXGXXXPPPPPXXXGXKKKKKKXGXXPXXX 598
           PP G G              +        PP G   PPPPP        ++         
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384

Query: 599 XXXXXXPPP 625
                 PPP
Sbjct: 385 VSNPPAPPP 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,180
Number of Sequences: 5004
Number of extensions: 16200
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)