Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L23
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   1.7  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.3  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   5.3  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -1

Query: 518 PPXGGXXXXXXXGXPPPXXXXXKIXXXPPPPGG 420
           PP G        G PPP          PPPPGG
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 505 PPXGGXXXPPPPPXXGXKKKKKKXGXXPXPXXXXXXXXPP 624
           PP      PPPPP  G        G  P P        PP
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 505 PPXGGXXXPPPPPXXGXKKKKKKXGXXPXP 594
           PP  G   PPPPP  G     KK G  P P
Sbjct: 357 PPPKGPSPPPPPPPGG-----KKGGPPPPP 381


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/92 (21%), Positives = 21/92 (22%)
 Frame = +2

Query: 404 FFXXXPPXGGGXXKXFXXXXXXGGXAXXXXXXXXPPXGXXXPPPPPXXXGXKKKKKKXGX 583
           F    PP   G           G           PP     PPPPP   G    +     
Sbjct: 51  FLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPP 110

Query: 584 XPXXXXXXXXXPPPXXXXXXXXXXXXXXXPPP 679
            P         PPP               PPP
Sbjct: 111 PPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +1

Query: 469 GGGXPXXXXXXXPPXGGXXXPPPPPXXGXKKKKKKXGXXPXPXXXXXXXXPP 624
           G G P       PP      PPPPP  G    +      P P        PP
Sbjct: 73  GPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPP 124


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +2

Query: 506 PPXGXXXPPPPPXXXGXKKKKKKXGXXPXXXXXXXXXPPP 625
           PP     PPPPP      +++ +    P         PPP
Sbjct: 30  PPPSDPPPPPPPHHHHHHRRRHRHSKKPKPQPQPQPPPPP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,630
Number of Sequences: 37544
Number of extensions: 313247
Number of successful extensions: 1579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)