Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_L21
(1317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.029
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 0.20
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.51
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.82
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 7.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 7.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 7.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.029
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -1
Query: 1005 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXPPPXXXXXXXXXXXXXPPPPPPP 850
PPPPPP PPP PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 34.3 bits (75), Expect = 0.038
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = -2
Query: 1001 PPPPPPXXXXXXXXXXXXXXXXXXXXXXPPPXXXXXXXXXXXXXPPPPPPPP 846
PPPPPP PP PPPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = -3
Query: 1003 PPPPPPPXXXXXXXXXXXXXXXXXXXXXPPPPXXXXXXXXXXXXXPPPPPP 851
PPPPP PPPP PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 870 PPPPPPPP 847
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect(2) = 0.20
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 869 PPPPPPPP 846
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 23.8 bits (49), Expect(2) = 0.20
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 1004 PPPPPPP 984
PPPPPPP
Sbjct: 306 PPPPPPP 312
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 869 PPPPPPPPXXXXXXGG 822
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 26.2 bits (55), Expect(2) = 0.51
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 866 PPPPPPPXXXXXXGGG 819
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 22.6 bits (46), Expect(2) = 0.51
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 869 PPPPPPPP 846
PPPPPP P
Sbjct: 907 PPPPPPLP 914
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.82
Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Frame = -2
Query: 1004 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXPPPXXXXXXXXXXXXXP-PPPPPPP 846
PPPPPPP P P PPPPPPP
Sbjct: 191 PPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 870 PPPPPPPP 847
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/53 (26%), Positives = 14/53 (26%)
Frame = -2
Query: 1004 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXPPPXXXXXXXXXXXXXPPPPPPPP 846
PPPPPPP P P PPPPP
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/58 (31%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Frame = -1
Query: 1005 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXPPPXXXXXXXXXXXXXPP-----PPPPPP 847
PPPPPPP PPP PP PPPPPP
Sbjct: 311 PPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 869 PPPPPPPP 846
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 869 PPPPPPPP 846
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 7.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 869 PPPPPPPP 846
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,700
Number of Sequences: 5004
Number of extensions: 31352
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 721345614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -