Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_L19
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 163 3e-41
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 75 1e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 74 2e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 71 1e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 56 5e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 46 4e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 1e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 39 8e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 6.2
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.2
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 163 bits (395), Expect = 3e-41
Identities = 83/123 (67%), Positives = 94/123 (76%), Gaps = 4/123 (3%)
Frame = -3
Query: 682 APXAFFQPSFXGY-GSXRHPRXHX*LHH---EVRRGHP*DLNANTVLSGGTTMYPGIADR 515
AP A FQPS G + H + + ++R+ DL N V+SGGTTMYPGIADR
Sbjct: 257 APEALFQPSALGLENAGIHEATYNSIMKCDVDIRK----DLYGNVVMSGGTTMYPGIADR 312
Query: 514 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHR 335
MQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASL TFQQMWISKQEYDESGP IV+R
Sbjct: 313 MQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYR 372
Query: 334 KCF 326
KCF
Sbjct: 373 KCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.9 bits (176), Expect = 1e-14
Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 6/85 (7%)
Frame = -3
Query: 565 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLXTF 395
N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF
Sbjct: 349 NVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTF 407
Query: 394 QQMWISKQEYDESGP---SIVHRKC 329
Q+WIS+QEY+E G +++ ++C
Sbjct: 408 HQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 74.1 bits (174), Expect = 2e-14
Identities = 34/83 (40%), Positives = 57/83 (68%)
Frame = -3
Query: 574 LNANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTF 395
L +N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASL TF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 394 QQMWISKQEYDESGPSIVHRKCF 326
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 33.9 bits (74), Expect = 0.023
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 702 GNEKXPLPXXLFSNPRXWGMEAXGIHXXTXNSIMKCDVDIR 580
G E P LF NP G EA G+H SI+ D+D+R
Sbjct: 256 GTECFSAPEVLF-NPEMMGSEASGLHIQLFKSILLSDIDLR 295
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -3
Query: 565 NTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLXTFQ 392
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ
Sbjct: 346 NIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQ 405
Query: 391 QMWISKQEYDESG 353
+W+SKQEYDE G
Sbjct: 406 HLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 56.0 bits (129), Expect = 5e-09
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 12/81 (14%)
Frame = -3
Query: 559 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 413
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 412 ASLXT-FQQMWISKQEYDESG 353
A + MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 702 GNEKXPLPXXLFSNPRXWGMEAXGIHXXTXNSIMKCDVDIRK 577
G+E+ P LF P G E G+ ++I DVDIRK
Sbjct: 251 GSERYECPECLFQ-PHLVGSEQPGLSEFIFDTIQAADVDIRK 291
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.4 bits (105), Expect = 4e-06
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Frame = -3
Query: 601 EVRRGHP*DLNANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKI 464
+VR+G L N VLSGG+T++ +R+Q+++ + + + +
Sbjct: 321 DVRKG----LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNV 376
Query: 463 IAPPERKYSVWIGGSILASLXTFQQMWISKQEYDESGPSIVHR 335
I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 377 ISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/78 (30%), Positives = 39/78 (50%)
Frame = -3
Query: 565 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTFQQM 386
N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 322 NVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNAN 380
Query: 385 WISKQEYDESGPSIVHRK 332
I++ EY E G +I+ RK
Sbjct: 381 KITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -3
Query: 574 LNANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLXTF 395
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 394 QQMWISKQEYDESGPSIV 341
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 38.7 bits (86), Expect = 8e-04
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Frame = -3
Query: 577 DLNANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILAS 407
+L ++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 528 NLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNR 587
Query: 406 LXTFQQMWISKQEYDESGPSIVHRK 332
+ ++WI ++ G ++ K
Sbjct: 588 IRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 433 WIGGSILASLXTFQQM---WISKQEYDESGPSIVHRK 332
++GGSI+A + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 551 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 372
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 371 GV 366
V
Sbjct: 534 AV 535
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 645 YPXNEGWKKAXG 680
YP N+GWK+A G
Sbjct: 309 YPVNQGWKQAMG 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,458
Number of Sequences: 5004
Number of extensions: 41635
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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