Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_L16
(926 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.7
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296 30 3.0
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 29 4.0
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 4.0
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 6.9
01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598 29 6.9
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 9.2
01_03_0005 + 11568545-11569119,11569179-11569191 28 9.2
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Frame = -2
Query: 580 GGGGXPP--PPXXGGGGG 533
GGGG PP PP GGGGG
Sbjct: 112 GGGGGPPSLPPGAGGGGG 129
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GGG PP P GGGGG
Sbjct: 127 GGGARPPAPGGGGGGG 142
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GGGG PP GGGGG
Sbjct: 125 GGGGGARPPAPGGGGG 140
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GGGG PP GGGGG
Sbjct: 126 GGGGARPPAPGGGGGG 141
>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
Length = 191
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
G GG PPP GGGGG
Sbjct: 103 GNGGYPPPHQRGGGGG 118
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 29.5 bits (63), Expect = 4.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 574 GGXPPPPXXGGGGG*XXKKK 515
GG PP P GGGGG KK
Sbjct: 6 GGKPPAPDAGGGGGGGESKK 25
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GGG PPP GGGGG
Sbjct: 390 GGGPGAPPPYHGGGGG 405
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GG G PPP GGGGG
Sbjct: 391 GGPGAPPPYHGGGGGG 406
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GGGG PP GGGGG
Sbjct: 61 GGGGGGGPPYYGGGGG 76
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGGG 533
GGGG PP GGGGG
Sbjct: 62 GGGGGGPPYYGGGGGG 77
>01_05_0319 - 20871781-20871909,20872001-20872053,20873271-20873598
Length = 169
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 580 GGGGXPPPPXXGGGG 536
GGGG PPPP G G
Sbjct: 10 GGGGTPPPPTGAGSG 24
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Frame = -2
Query: 580 GGGGXPPPP-----XXGGGGG 533
GGGG PPPP GGGGG
Sbjct: 17 GGGGGPPPPRRRLRSSGGGGG 37
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Frame = -2
Query: 580 GGGGX-----PPPPXXGGGGG 533
GGGG PPPP GGGGG
Sbjct: 83 GGGGTVMYTSPPPPYSGGGGG 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.146 0.470
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,300
Number of Sequences: 37544
Number of extensions: 207397
Number of successful extensions: 1250
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -