Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L16
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    29   4.7  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   6.2  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   6.2  

>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 580 GGGGXP-PPPXXGGGGG 533
           GGGG P PPP  GGGGG
Sbjct: 267 GGGGYPQPPPQQGGGGG 283


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
 Frame = -2

Query: 580 GGGGXPP----PPXXGGGGG 533
           GGGG PP    PP  GGGGG
Sbjct: 864 GGGGGPPGYQRPPYRGGGGG 883


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 580 GGGGXPPPPXXGGGGG 533
           GGGG PP    GGGGG
Sbjct: 622 GGGGGPPRGPGGGGGG 637



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 580 GGGGXPPPPXXGGGGG 533
           GGGG P  P  GGGGG
Sbjct: 623 GGGGPPRGPGGGGGGG 638


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 580 GGGGXPPPPXXGGGGG 533
           GGGG PP    GGGGG
Sbjct: 622 GGGGGPPRGPGGGGGG 637



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 580 GGGGXPPPPXXGGGGG 533
           GGGG P  P  GGGGG
Sbjct: 623 GGGGPPRGPGGGGGGG 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.146    0.470 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,950,265
Number of Sequences: 27780
Number of extensions: 111850
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)