Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_L14
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 135 7e-33
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 122 7e-29
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 119 4e-28
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 117 2e-27
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 115 6e-27
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 67 3e-12
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 54 2e-08
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 53 4e-08
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.097
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz... 29 0.52
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 28 1.6
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 3.6
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 4.8
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 6.4
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 25 8.4
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 25 8.4
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 25 8.4
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 135 bits (326), Expect = 7e-33
Identities = 58/100 (58%), Positives = 85/100 (85%)
Frame = -3
Query: 330 QGIDIRKDAMAMQRLKEAAEKAKIELSGSVQTDINLPYLTMDASGPKHMNLKMTRSKLES 151
+G+D+ KD +A+QR++EAAEKAK ELS +TDI+LP++T DA+GPKH+N++++R++ E
Sbjct: 291 EGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFITADATGPKHINMEISRAQFEK 350
Query: 150 LVGDLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
LV L+RRT+ PC++AL+DA +Q S+I EV+LVGGMTRMP
Sbjct: 351 LVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMP 390
Score = 130 bits (315), Expect = 2e-31
Identities = 59/88 (67%), Positives = 73/88 (82%)
Frame = -2
Query: 595 KRCRSIXGLNVLRVINEPTAAAFAYGMDKTDDKIIAVYDLGGGTFDISVLEIQKGVFEVK 416
K +I GLNVLRV+NEPTAAA AYG+DK +D I+AV+DLGGGTFDIS+LE+ GVFEV+
Sbjct: 203 KAAGAIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFDLGGGTFDISILELNNGVFEVR 262
Query: 415 STNGDTLLGGEDFDNVIVNFLVDEFKRD 332
STNGDT LGGEDFD +V +V+ FK++
Sbjct: 263 STNGDTHLGGEDFDVALVRHIVETFKKN 290
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/33 (75%), Positives = 25/33 (75%)
Frame = -3
Query: 681 TXEAYLNTSVKNAVVTVPAYFNDSQRQXTKDAG 583
T YL VKNAVVTVPAYFNDSQRQ TK AG
Sbjct: 174 TASTYLGKDVKNAVVTVPAYFNDSQRQATKAAG 206
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 122 bits (293), Expect = 7e-29
Identities = 56/88 (63%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Frame = -2
Query: 595 KRCRSIXGLNVLRVINEPTAAAFAYGMDKTD-DKIIAVYDLGGGTFDISVLEIQKGVFEV 419
K +I GLNV+R++NEPTAAA AYG+DKTD +K I VYDLGGGTFD+S+L I GVFEV
Sbjct: 190 KDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDTEKHIVVYDLGGGTFDVSLLSIDNGVFEV 249
Query: 418 KSTNGDTLLGGEDFDNVIVNFLVDEFKR 335
+T+GDT LGGEDFDN ++N+L + R
Sbjct: 250 LATSGDTHLGGEDFDNRVINYLARTYNR 277
Score = 63.7 bits (148), Expect = 3e-11
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Frame = -3
Query: 324 IDIRKDAMAMQRLKEAAEKAKIELSG--SVQTDINLPYLTMDASGPKHMNLKMTRSKLES 151
+D+ KD AM +LK EKAK LS SV+ +I + D S ++R+K E
Sbjct: 281 VDVTKDLKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFSET------LSRAKFEE 334
Query: 150 LVGDLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
+ DL ++T+ P ++ L+D+ +++S+I +++LVGG TR+P
Sbjct: 335 INMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIP 374
Score = 54.0 bits (124), Expect = 2e-08
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = -3
Query: 681 TXEAYLNTSVKNAVVTVPAYFNDSQRQXTKDAG 583
T EAYL V +AVVTVPAYFND+QRQ TKDAG
Sbjct: 161 TAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAG 193
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 119 bits (287), Expect = 4e-28
Identities = 60/116 (51%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Frame = -2
Query: 667 LEHKCEKCSXNSASLFQ*FPASXHKRCRSIXGLNVLRVINEPTAAAFAYGMDKTDDKI-- 494
L + EK + F + K +I GLNVLR+INEPTAAA AYG+D DK
Sbjct: 137 LNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKN 196
Query: 493 IAVYDLGGGTFDISVLEIQKGVFEVKSTNGDTLLGGEDFDNVIVNFLVDEFKRDSR 326
+ ++DLGGGTFD+S+L+IQ GVFEV +T GDT LGGEDFDN +V + EFKR +
Sbjct: 197 VLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQK 252
Score = 66.5 bits (155), Expect = 4e-12
Identities = 35/100 (35%), Positives = 58/100 (58%)
Frame = -3
Query: 330 QGIDIRKDAMAMQRLKEAAEKAKIELSGSVQTDINLPYLTMDASGPKHMNLKMTRSKLES 151
Q IDI D A++RL+ A E+AK LS QT + + L S + +TR++ E
Sbjct: 251 QKIDISDDPRALRRLRSACERAKRALSSVTQTTVEVDSL----SNGIDFSSSITRARFED 306
Query: 150 LVGDLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
+ + T+ P K L+D++V ++D+ +++LVGG TR+P
Sbjct: 307 INATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRIP 346
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = -3
Query: 675 EAYLNTSVKNAVVTVPAYFNDSQRQXTKDAG 583
EA LN V+ AV+TVPAYF+DSQR TKDAG
Sbjct: 134 EAKLNKRVEKAVITVPAYFSDSQRAATKDAG 164
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 117 bits (281), Expect = 2e-27
Identities = 52/87 (59%), Positives = 72/87 (82%), Gaps = 2/87 (2%)
Frame = -2
Query: 580 IXGLNVLRVINEPTAAAFAYGMDKTD--DKIIAVYDLGGGTFDISVLEIQKGVFEVKSTN 407
I GLNVLR+INEPTAAA AYG+D+++ + + ++DLGGGTFD+S+L I++G+FEVK+T
Sbjct: 162 IAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFEVKATA 221
Query: 406 GDTLLGGEDFDNVIVNFLVDEFKRDSR 326
GDT LGGEDFD+ +VN + EFKR ++
Sbjct: 222 GDTHLGGEDFDSRLVNHFIQEFKRKNK 248
Score = 70.1 bits (164), Expect = 3e-13
Identities = 36/97 (37%), Positives = 58/97 (59%)
Frame = -3
Query: 321 DIRKDAMAMQRLKEAAEKAKIELSGSVQTDINLPYLTMDASGPKHMNLKMTRSKLESLVG 142
DI +A A++RL+ A E+AK LS S Q I + L +TR++ E L
Sbjct: 250 DITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLFEGID----FYTSITRARFEELCA 305
Query: 141 DLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
DL R+T+ P ++ L+D++V ++ + E++LVGG TR+P
Sbjct: 306 DLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIP 342
Score = 55.2 bits (127), Expect = 9e-09
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = -3
Query: 681 TXEAYLNTSVKNAVVTVPAYFNDSQRQXTKDAG 583
T EAYL V +AVVTVPAYFNDSQRQ TKDAG
Sbjct: 128 TAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAG 160
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 115 bits (277), Expect = 6e-27
Identities = 52/87 (59%), Positives = 71/87 (81%), Gaps = 2/87 (2%)
Frame = -2
Query: 580 IXGLNVLRVINEPTAAAFAYGMDKTD--DKIIAVYDLGGGTFDISVLEIQKGVFEVKSTN 407
I GLNVLR+INEPTAAA AYG+D+++ + + ++DLGGGTFD+S+L I++G+FEVK+T
Sbjct: 162 IAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFEVKATA 221
Query: 406 GDTLLGGEDFDNVIVNFLVDEFKRDSR 326
GDT LGGEDFD+ +VN EFKR ++
Sbjct: 222 GDTHLGGEDFDSRLVNHFAQEFKRKNK 248
Score = 71.3 bits (167), Expect = 1e-13
Identities = 37/97 (38%), Positives = 57/97 (58%)
Frame = -3
Query: 321 DIRKDAMAMQRLKEAAEKAKIELSGSVQTDINLPYLTMDASGPKHMNLKMTRSKLESLVG 142
DI +A A++RL+ A E+AK LS S Q I + L +TR++ E L
Sbjct: 250 DITGNARAVRRLRTACERAKRTLSSSAQASIEIDSLYEGID----FYTSITRARFEELCA 305
Query: 141 DLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
DL R T+ P +K L+D+++ +S + E++LVGG TR+P
Sbjct: 306 DLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIP 342
Score = 52.0 bits (119), Expect = 8e-08
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = -3
Query: 675 EAYLNTSVKNAVVTVPAYFNDSQRQXTKDAG 583
EA+L V +AVVTVPAYFNDSQRQ TKDAG
Sbjct: 130 EAFLGGKVTDAVVTVPAYFNDSQRQATKDAG 160
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 66.9 bits (156), Expect = 3e-12
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Frame = -2
Query: 583 SIXGLNVLRVINEPTAAAFAYGMDKTD------DKIIAVYDLGGGTFDISVLEIQKGVFE 422
+I GLN LR++N+ AAA YG+ KTD + +A+ D G + +S++E +G F
Sbjct: 165 NIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFH 224
Query: 421 VKSTNGDTLLGGEDFDNVIVNFLVDEFK 338
+KST D LG + D ++++ EFK
Sbjct: 225 IKSTVCDRNLGSRNMDKALIDYFAAEFK 252
Score = 52.8 bits (121), Expect = 5e-08
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = -3
Query: 324 IDIRKDAMAMQRLKEAAEKAKIELSGSVQTDINLPYLTMDASGPKHMNLKMTRSKLESLV 145
ID+ + A RL A E+ K LS + +N+ + D + RS E L+
Sbjct: 257 IDVLSNPKATFRLATAVERLKKVLSANANAPLNVEMIMNDIDASSFIK----RSDFEELI 312
Query: 144 GDLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
L+ R P +KAL+ A +++ D+ + +VGG TR+P
Sbjct: 313 KPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRVP 350
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 675 EAYLNTSVKNAVVTVPAYFNDSQRQXTKDA 586
EA L SV + V+++PA+F D QR+ +A
Sbjct: 134 EAELIGSVSDVVISIPAWFTDIQRRALLEA 163
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/99 (36%), Positives = 55/99 (55%)
Frame = -3
Query: 327 GIDIRKDAMAMQRLKEAAEKAKIELSGSVQTDINLPYLTMDASGPKHMNLKMTRSKLESL 148
GID+ + A+ RL++ A + K LS + + ++ L A G LK+TRS LESL
Sbjct: 284 GIDLSHNHRALARLEKEALRVKHILSANSEAIASIEEL---ADGID-FRLKITRSVLESL 339
Query: 147 VGDLIRRTVAPCQKALQDAEVQRSDIGEVLLVGGMTRMP 31
D+ V P KAL+ A + S+I ++L GG +R+P
Sbjct: 340 CKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRIP 378
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = -2
Query: 574 GLNVLRVINEPTAAAFA--YGMDKTDDKIIAVYDLGGGTFDISVLEIQKGVFEVKSTNGD 401
GL VL++I++P A A Y + DK + V + G ++SV+ ++ G+ + ++ D
Sbjct: 190 GLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMTILASVHD 249
Query: 400 TLLGGEDFDNVIVNFLVDEFKR 335
LGGE +V+VNF EF++
Sbjct: 250 ENLGGEQLTDVLVNFFAKEFEK 271
Score = 32.3 bits (70), Expect = 0.073
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 675 EAYLNTSVKNAVVTVPAYFNDSQRQXTKDA 586
E +L T V V++VP YF D+QR+ + A
Sbjct: 156 EDFLGTKVNGCVMSVPVYFTDAQRKALESA 185
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 31.9 bits (69), Expect = 0.097
Identities = 26/79 (32%), Positives = 37/79 (46%)
Frame = +3
Query: 333 SRLNSSTRKFTITLSKSSPPSRVSPLVDFTSNTPFWISSTEISKVPPPRSYTAIILSSVL 512
S + SS ++ S S P S S DF+S+ S S +P S + ILSS
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSS---DFSSSITTISSGISSSSIPSTFSSVSSILSSST 584
Query: 513 SIP*AKAAAVGSLITRSTF 569
S P + + ++ S T STF
Sbjct: 585 SSPSSTSLSISSSSTSSTF 603
>SPBC18H10.15 |ppk23||serine/threonine protein kinase
Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.52
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Frame = -2
Query: 664 EHKCEKCSXNSASLFQ*FPASXHKRCRSIXGLNVLRVINEPTAAAFAYGMDKTDDKIIAV 485
E K E+ + ++ L+ K C SI +L I E + G+DK+ + ++A+
Sbjct: 43 EEKAEERNIDACRLYLMGNTPELKSCNSIDDYEILEKIEEGSYGIVYRGLDKSTNTLVAL 102
Query: 484 ----YDLGGGTFDISVLEIQKGVFEVKSTN---GDTLLGGEDFDNVIVNFLVDEF 341
+D G F I+ L + + ++ N + ++ G+D +V +LV EF
Sbjct: 103 KKIKFDPNGIGFPITSLREIESLSSIRHDNIVELEKVVVGKDLKDV---YLVMEF 154
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 481 DLGGGTFDISVLEIQKGVFEVKSTNGDTLLG-GEDFDNVIVNFLVDEFKR 335
D GG I V E +KGV + NGD G D+ + +N D R
Sbjct: 74 DKCGGYNAIQVSEYEKGVLAILQLNGDPCYAYGTDYPFLALNVSFDSIDR 123
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 357 KFTITLSKSSPP--SRVSPLVDFTSNTPFWISSTEISKVPPPRSYTAIILSSVLSIP 521
K +T + PP S +P +NTP I++T I VP A LSIP
Sbjct: 201 KVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIP 257
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 357 KFTITLSKSSPPSRVSPLVDFTSNTPFWISSTEISKVPPPRSYTAIILSSVLSIP 521
+F+ T S + PS SPL NT +S PP S + +SV S+P
Sbjct: 99 RFSSTHSLTRQPSPRSPLTPLKGNTRASPEIRYVSDFTPPSSPFEDMQASVHSLP 153
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +3
Query: 330 ESRLNSSTRKFTIT-LSKS----SPPSRVSPLVDFTSNTPFWISSTEISKVPPPR 479
ES N+ T+ T LS S S R+ PLVD + F ++ + PPPR
Sbjct: 75 ESIPNAGTQSQNFTHLSASKIRISDEDRIKPLVDLNQDHSFDMAYLTPASAPPPR 129
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 75 PIAALRHPEGPSGTAPPSA 131
P A H E PSG+ PPSA
Sbjct: 130 PNPAAHHAELPSGSVPPSA 148
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 509 DRRQNNSGV*PRRWNLRYLGAGDPERSVRSEVHQ 408
+R QN + P + ++Y+G DP++ + +EV +
Sbjct: 256 ERVQNEVTLSPEQLRIQYVGKQDPKKHLDAEVQK 289
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 509 DRRQNNSGV*PRRWNLRYLGAGDPERSV-RSEVHQRRHS 396
+R+QNN + R+ RY G GD V RS+V RRH+
Sbjct: 52 NRKQNNLPIYIGRYTERYNG-GDVSAIVFRSKVVSRRHA 89
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 378 KSSPPSRVSPLVDFTSNTPFWISSTEIS 461
K P S + PL+D ++ P W++++ S
Sbjct: 31 KGHPDSPIFPLLDVINSHPDWVTTSSCS 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,904,440
Number of Sequences: 5004
Number of extensions: 57417
Number of successful extensions: 209
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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