Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_L11
(841 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 0.015
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 34 0.14
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 32 0.44
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 32 0.44
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 28 7.2
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 28 7.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 9.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 9.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 9.5
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGGG 532
G GGGG P PPP GGG
Sbjct: 40 GGCGGGGGCGGGCAPPPPPPACGGG 64
Score = 28.7 bits (61), Expect(2) = 0.015
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGGG 532
G GGGG P PPP GGG
Sbjct: 97 GGCGGGGGCGGGCAPPPPPPACGGG 121
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGGG 532
G G GGG P PPPP GG
Sbjct: 39 GGGCGGGGGCGGGCAPPPPPPACGG 63
Score = 28.3 bits (60), Expect(2) = 0.28
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGGG 532
G G GGG P PPPP GG
Sbjct: 96 GGGCGGGGGCGGGCAPPPPPPACGG 120
Score = 27.5 bits (58), Expect(2) = 0.015
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 395 GXGXKXGXXPPPPXXXXXKKXGXGGGG 475
G G G PPPP G GGGG
Sbjct: 45 GGGCGGGCAPPPPPPACGGGCGGGGGG 71
Score = 23.4 bits (48), Expect(2) = 0.28
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 395 GXGXKXGXXPPPPXXXXXKKXGXGGGGG 478
G G PPPP G GG GG
Sbjct: 47 GCGGGCAPPPPPPACGGGCGGGGGGCGG 74
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 401 GXKXGXXPPPPXXXXXKKXGXGGGGGXXXXXXXKPXPPPP 520
G PPP + G GGGGG P PPPP
Sbjct: 63 GNNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPPP 102
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +2
Query: 395 GXGXKXGXXPPPPXXXXXKKXGXGGGGGXXXXXXXKPXPPPP 520
G G PPP + GGGGG PPPP
Sbjct: 60 GFGGNNYNNGPPPFDGGYNRPYGGGGGGGYGRPQGYVPPPPP 101
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 395 GXGXKXGXXPPPPXXXXXKKXGXGGGGGXXXXXXXKPXPPPPXGGG 532
G G G PPP G GGGGG PP P GGG
Sbjct: 41 GCGGGGGCAPPPAPCGG----GCGGGGGGCGGGGGCAPPPAPCGGG 82
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 395 GXGXKXGXXPPPPXXXXXKKXGXGGGGGXXXXXXXKPXPPPPXGGG 532
G G G PPP G GGGGG PP P GGG
Sbjct: 41 GCGGGGGCAPPPAPCGG----GCGGGGGGCGGGGGCAPPPAPCGGG 82
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGGG 532
G GG GG P PPPP GGG
Sbjct: 197 GGGGSGGSGGGSGRFPPPPPPYGGG 221
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +2
Query: 395 GXGXKXGXXPPPPXXXXXKKXGXGGGGGXXXXXXXKPXPPPPXGGG 532
G G G PPPP G GGGGG P P GGG
Sbjct: 22 GGGGGCGCAPPPP---PPSPCGCGGGGG-LALPQLPPLSLPSLGGG 63
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGGG 532
G G GGG P PPPP GG
Sbjct: 30 GCGCGGGGGGGGCCAPPPPPPVCGG 54
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 464 GGGGGXXXXXXXKPXPPPPXGGG 532
GGGGG P PPPP GGG
Sbjct: 22 GGGGGG----CCAPPPPPPCGGG 40
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGG-GXP 538
G GGGGG P PP P G G P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKP 116
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGG-GXP 538
G GGGGG P PP P G G P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKP 116
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGG-GXP 538
G GGGGG P PP P G G P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKP 116
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = +2
Query: 458 GXGGGGGXXXXXXXKPXPPPPXGG-GXP 538
G GGGGG P PP P G G P
Sbjct: 89 GGGGGGGGGCDGCCNPGPPGPGGSPGKP 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,768
Number of Sequences: 27780
Number of extensions: 231923
Number of successful extensions: 1493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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