Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L08
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   2.6  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   2.6  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   2.6  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 477 GXPPPPXKXXGGXXPXXXXPXXXGXKXXXXPXXXXXGFXP 596
           G PPPP    GG  P    P   G K    P      F P
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 484 PPPXXKXGGGKXPFXXPXXXGGXKXXXXPXXKXGXFXP 597
           PPP     GG  P   P   GG K    P    G F P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 477 GXPPPPXKXXGGXXPXXXXPXXXGXKXXXXPXXXXXGFXP 596
           G PPPP    GG  P    P   G K    P      F P
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 484 PPPXXKXGGGKXPFXXPXXXGGXKXXXXPXXKXGXFXP 597
           PPP     GG  P   P   GG K    P    G F P
Sbjct: 758 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 477 GXPPPPXKXXGGXXPXXXXPXXXGXKXXXXPXXXXXGFXP 596
           G PPPP    GG  P    P   G K    P      F P
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 484 PPPXXKXGGGKXPFXXPXXXGGXKXXXXPXXKXGXFXP 597
           PPP     GG  P   P   GG K    P    G F P
Sbjct: 341 PPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,292
Number of Sequences: 27780
Number of extensions: 203464
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)