Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_L04
(1126 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0495 + 9880714-9881196 35 0.14
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.41
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 30 2.9
01_03_0005 + 11568545-11569119,11569179-11569191 29 5.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 6.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 8.9
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 8.9
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 8.9
>09_02_0495 + 9880714-9881196
Length = 160
Score = 34.7 bits (76), Expect = 0.14
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -3
Query: 452 GGGXXXRGXFXXPPPKXXPXXFXKXGGGGVXXXPPPPP 339
G G G + PPP P F GGG P PPP
Sbjct: 70 GAGGLFGGTYPPPPPGVMPGAFAPPFGGGFPYGPAPPP 107
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect = 0.41
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -3
Query: 434 RGXFXXPPPKXXPXXFXKXGGGGVXXXPPPPPRGXXXNPP 315
+G PPPK GG PPPPP+G PP
Sbjct: 351 KGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 416 PPPKXXPXXFXKXGGGGVXXXPPPPPRGXXXNPPXXFXGXK 294
PPPK P G PPPPP+G PP G K
Sbjct: 339 PPPKGPPPPPPAKG-----PPPPPPPKGPSPPPPPPPGGKK 374
>03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 30.3 bits (65), Expect = 2.9
Identities = 22/98 (22%), Positives = 36/98 (36%)
Frame = -1
Query: 1012 EXXAXXERXXGGXEGXRKXXXXRXXXXXRXXRXKXXRREXTEXXRRKRDEKXREXXGXXK 833
E A E GG +G ++ R + RR+ E RR+ +EK R +
Sbjct: 465 ERKAEEEEEGGGGKGEKEREEEERRQ--REKEEEERRRQEEERKRREEEEKERREREEEE 522
Query: 832 XXEXRRKKAERXXXXSXXREXGREXXRXXGRMXXXKDG 719
+ +++ +R RE E R +DG
Sbjct: 523 RRQREKEEKKRREEEEQRREEEEEERRREEEEEEQEDG 560
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 316 GGXFXXPRGGGGGXXXTPPPP 378
GG GGGGG TPPPP
Sbjct: 123 GGGGWQQGGGGGGAYPTPPPP 143
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 6.7
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 523 PXGXXXPXRPPAPXXRXXPXPXXXXXSPXXXXGXPPPISXP 645
P G P RPP P P P G PP I P
Sbjct: 258 PNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPP 298
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 452 GGGXXXRGXFXXPPPKXXPXXFXKXGGGGVXXXPPPPP 339
G +G PPP P + G GV PPPPP
Sbjct: 681 GAATSSKGPPPPPPPPLPPAN--RTNGPGVPSAPPPPP 716
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 904 RREXTEXXRRKRDEKXREXXGXXKXXEXRRKKAER 800
RR + RRKR EK RE K + RRK+ ++
Sbjct: 149 RRRRKDKERRKRKEKERERERKKKEKKKRRKEEKK 183
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -3
Query: 452 GGGXXXRGXFXXPPPKXXPXXFXKXGGGGVXXXPPPPPRGXXXNPP 315
GGG RG PP + GGGG PP P PP
Sbjct: 5 GGGRGGRGGEQRPPYSGRGDVPGRGGGGGGGGAPPYRPASGFVWPP 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.147 0.494
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,695,840
Number of Sequences: 37544
Number of extensions: 373837
Number of successful extensions: 1271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3398064036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -