Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L02
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   2.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.7  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   8.8  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +3

Query: 18  LSSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 197
           +S+S     +  S+     D  +PS  P    +SS+  S  RH  +   +L S     + 
Sbjct: 100 VSTSTSGCASAHSVGYQNIDNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRS 159

Query: 198 KTDSIDLRDPNGLRRRVSR 254
             D   LRD +  + RVS+
Sbjct: 160 AMDG--LRDRHIRKVRVSQ 176


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 21  SSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKK 197
           S +  S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R  K
Sbjct: 129 SQNPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLK 187

Query: 198 KTDSIDL 218
             D+ +L
Sbjct: 188 NPDAWNL 194


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 124 VDDFRSWRGVVLGRAASCCDLLRLS 50
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,035
Number of Sequences: 5004
Number of extensions: 39705
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)