Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L02
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.32 
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060...    29   5.3  
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    29   5.3  
01_06_0695 - 31292622-31293317                                         28   7.0  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 87  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 215
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>08_02_0104 +
           12404890-12405129,12405244-12405333,12405953-12406036,
           12406888-12407132,12409032-12409095,12409270-12409968,
           12410063-12410176,12410287-12410418,12410594-12410770,
           12411085-12411138,12411230-12411292,12411396-12412307,
           12412408-12412535,12413680-12413962
          Length = 1094

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 24  SSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT 203
           S  +SPG  L   R  HD +L         KSST  +  R   E      SR     +KT
Sbjct: 731 SEADSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKT 787

Query: 204 DSID 215
           +S++
Sbjct: 788 ESVE 791


>02_04_0179 +
           20682852-20684510,20684593-20684661,20684741-20684809,
           20686779-20688206
          Length = 1074

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
 Frame = +3

Query: 18  LSSSDESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKK 197
           L  +DESP A  S  R       PS   RQ++++  D    R + E  P        V K
Sbjct: 492 LGRADESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSK 547

Query: 198 KTDSIDLRDPNGL----RRRVSRFECETRLVKSHCLEPP 302
                  + PN         VSR E ET+  K + +  P
Sbjct: 548 LEGETTQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 39  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 173
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,938
Number of Sequences: 37544
Number of extensions: 308869
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)