Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L01
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   143   3e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   139   3e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   5e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.7  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.6  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  143 bits (346), Expect = 3e-35
 Identities = 69/109 (63%), Positives = 78/109 (71%)
 Frame = -2

Query: 696 GXTXIAGRFTPGVFINQIQXAFREPRFXIVLDPAQDHQPIXEASYVNIPVIALCNTDSPX 517
           G T IAGRFTPG F N I   +REPR  +V DP  D Q I EAS+VNIPVIALC+TDS  
Sbjct: 97  GATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSIL 156

Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
             VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+F
Sbjct: 157 NHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYF 205


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  139 bits (337), Expect = 3e-34
 Identities = 68/109 (62%), Positives = 77/109 (70%)
 Frame = -2

Query: 696 GXTXIAGRFTPGVFINQIQXAFREPRFXIVLDPAQDHQPIXEASYVNIPVIALCNTDSPX 517
           G T IAGRFTPG F N I   +REPR  IV DP  D Q I EAS+VNIPVIALC+TDS  
Sbjct: 98  GATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSIL 157

Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
             VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+F
Sbjct: 158 NHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYF 206


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -2

Query: 624 PRFXIVLDPAQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLL 445
           P   ++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 444 AR 439
           +R
Sbjct: 240 SR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 374 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 472
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 546 IALCNTDSPXRFVDIAIPCNTKSSHSI 466
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 422 VVCFPVTSAGMLWLICSSNRDPEESEKD 339
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,762
Number of Sequences: 5004
Number of extensions: 49615
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)