Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_L01
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   140   1e-33
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   140   1e-33
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   2.8  
09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691           29   4.9  
06_03_0543 + 21967787-21970261                                         29   4.9  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    29   4.9  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   6.5  
01_06_0867 - 32586254-32586574,32586756-32587172                       28   8.6  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  140 bits (339), Expect = 1e-33
 Identities = 63/109 (57%), Positives = 77/109 (70%)
 Frame = -2

Query: 696 GXTXIAGRFTPGVFINQIQXAFREPRFXIVLDPAQDHQPIXEASYVNIPVIALCNTDSPX 517
           G   IAGR TPG F NQ+Q +F EPR  I+ DP  DHQPI E++  NIP IA C+TDSP 
Sbjct: 99  GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158

Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
           R+VDI IP N K   SIG ++WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 159 RYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  140 bits (339), Expect = 1e-33
 Identities = 63/109 (57%), Positives = 78/109 (71%)
 Frame = -2

Query: 696 GXTXIAGRFTPGVFINQIQXAFREPRFXIVLDPAQDHQPIXEASYVNIPVIALCNTDSPX 517
           G   IAGR TPG F NQ+Q +F EPR  I+ DP  DHQPI E++  NIP IA C+TDSP 
Sbjct: 99  GAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPM 158

Query: 516 RFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFF 370
           R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFF
Sbjct: 159 RYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFF 207


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 209 TRCSSCFWSTPCSRRMVCPGTR 144
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691
          Length = 280

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 472 VGRLGVAWDSNV-HKSXWGVCVAQSNHRNVDI*SFXNGL 585
           V  LG+A D+NV H   WG C A S  R V I S+ +GL
Sbjct: 205 VSSLGLAGDANVLHFGAWG-CTADSRIRRV-ISSYLSGL 241


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 462 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 373
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 445 QQPPHQTNRVGRLGVAWDSNVHKSXWGVCVAQS 543
           + PP Q  RVG  GV      H   WG C  +S
Sbjct: 17  EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>01_06_0867 - 32586254-32586574,32586756-32587172
          Length = 245

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 367 LEEQINHNIPALVTGKHTTKPQHFTCQQPPHQ-TNRVGRLGVAWDSNVH 510
           LE Q+ +   AL +    T PQHF   QP H   + + ++ V +D   H
Sbjct: 150 LESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLPH 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,805
Number of Sequences: 37544
Number of extensions: 349017
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)