Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_K23
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 184 1e-47
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 184 1e-47
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 29 0.75
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 3.0
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.0
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 184 bits (448), Expect = 1e-47
Identities = 101/209 (48%), Positives = 129/209 (61%)
Frame = -3
Query: 734 GTXEDKVKWAREHLENXIPVDXVFAQDEMIDCIGVTRAKGYKGVTXRWHTKEATP*DTPG 555
G+ DKV+WAREH E + + F Q+EMID IGVTR KG +G T RW TK P T
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL-PRKTHR 244
Query: 554 XLXKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNNASTE 375
L K+ + G ++ + R + T+ L+ I++ NAST+
Sbjct: 245 GLRKVACI--GAWHPA-NVQWTVARAGNAGYMHRTQ----LNSKIYRIGAGDDAKNASTD 297
Query: 374 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 195
+D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK
Sbjct: 298 FDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLK 357
Query: 194 FIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 358 WIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 73.7 bits (173), Expect = 3e-14
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = -2
Query: 573 PVRHTRXLXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 412
P + R L KVACIGAWHP V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 184 bits (448), Expect = 1e-47
Identities = 101/209 (48%), Positives = 129/209 (61%)
Frame = -3
Query: 734 GTXEDKVKWAREHLENXIPVDXVFAQDEMIDCIGVTRAKGYKGVTXRWHTKEATP*DTPG 555
G+ DKV+WAREH E + + F Q+EMID IGVTR KG +G T RW TK P T
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRL-PRKTHR 244
Query: 554 XLXKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNNASTE 375
L K+ + G ++ + R + T+ L+ I++ NAST+
Sbjct: 245 GLRKVACI--GAWHPA-NVQWTVARAGNAGYMHRTQ----LNSKIYRIGAGDDAKNASTD 297
Query: 374 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 195
+D +EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK
Sbjct: 298 FDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLK 357
Query: 194 FIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 358 WIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 73.7 bits (173), Expect = 3e-14
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = -2
Query: 573 PVRHTRXLXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 412
P + R L KVACIGAWHP V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 239 PRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.75
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 665 FAQDEMIDCIGVTRAKGYKGVTXRW 591
F + +D G+T+ KG+ GV RW
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKRW 169
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 493 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 347
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 129 HGYTQEGSYSRRSCGYHNPS 70
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 469 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 329
SP+ + L+Y E + K + + + LRNPL R++VSP
Sbjct: 63 SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 376 SVDALFLITLPSFLWIPW 429
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,291,135
Number of Sequences: 5004
Number of extensions: 68501
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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