Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_K23
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 181 5e-46
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 174 8e-44
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 1.8
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
06_03_0915 - 25929433-25930893 29 5.5
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 7.3
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 28 9.6
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 181 bits (441), Expect = 5e-46
Identities = 104/212 (49%), Positives = 127/212 (59%), Gaps = 5/212 (2%)
Frame = -3
Query: 734 GTXEDKVKWAREHLENXIPVDXVFAQDEMIDCIGVTRAKGYKGVTXRWHTKEATP*DTPG 555
GT DKV + + E IPVD VF +DEMID IGVT+ KGY+GV RW P T
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL-PRKTHR 247
Query: 554 XLXKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNN---- 387
L K+ + G R V TV + + ++KK K+ K+
Sbjct: 248 GLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESH 296
Query: 386 -ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 210
A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE
Sbjct: 297 AACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 356
Query: 209 KINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 357 EIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -2
Query: 573 PVRHTRXLXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIG 430
P + R L KVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 174 bits (423), Expect = 8e-44
Identities = 100/204 (49%), Positives = 123/204 (60%), Gaps = 5/204 (2%)
Frame = -3
Query: 734 GTXEDKVKWAREHLENXIPVDXVFAQDEMIDCIGVTRAKGYKGVTXRWHTKEATP*DTPG 555
GT DKV + + E IPVD VF +DEMID IGVT+ KGY+GV RW P T
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRL-PRKTHR 247
Query: 554 XLXKLPALELGILXGCRSL*LVLVRKVIITVLK*TRKSIVLDQGIHKKDGKVIKNN---- 387
L K+ + G R V TV + + ++KK K+ K+
Sbjct: 248 GLRKVACI--GAWHPAR---------VSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESH 296
Query: 386 -ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 210
A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE
Sbjct: 297 AACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALE 356
Query: 209 KINLKFIDTSSKFGHGRFQTPADK 138
+I LKFIDTSSKFGHGRFQT +K
Sbjct: 357 EIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -2
Query: 573 PVRHTRXLXKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIG 430
P + R L KVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 520 MPSSNAGNFXKXPGVSYGVASL-VCQRXVTPLYPLALVTP 636
MP + GN P V YG++SL V + +T L++V P
Sbjct: 482 MPQMSIGNGGSAPSVQYGISSLPVADKPLTNRTSLSMVVP 521
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>06_03_0915 - 25929433-25930893
Length = 486
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 330 GETSHRCNGFLRQIILSRCIVFNNFAILFVDSLVQYDRFSCSFQY 464
GE H+ G I+ C++ NN +L V ++ D S S ++
Sbjct: 138 GEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGDVMSGSLKH 182
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 343 IGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 474
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 495 ARAGQKGYHHRTEMNKKIYRIGPRNPQ 415
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,825,859
Number of Sequences: 37544
Number of extensions: 459840
Number of successful extensions: 1101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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