Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_K21
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       33   0.35 
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    32   0.62 
06_01_0178 + 1386981-1387505                                           30   1.9  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    30   1.9  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    29   3.3  
10_08_0223 - 15986763-15987575                                         28   7.6  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    28   7.6  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 26/91 (28%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
 Frame = -1

Query: 649 GXXPGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGGGXXGGXXXXXRRG--XXAXAXXGG 476
           G  P  P G G    A P  P GG          GGG  GG       G    A     G
Sbjct: 115 GGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPG 174

Query: 475 GXXXTNRPXXTGXPPRG*XGXXXXPGXXGAG 383
           G      P        G  G    PG  G G
Sbjct: 175 GGGGGGGPGRAPGGGGGGGGPGRAPGGGGGG 205


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 24/86 (27%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
 Frame = +3

Query: 384 PAPXXPGXXXX-PXXPLGGXPVXXGRFVXXFPPPLXAXAXXPLLXWXXXPPFXPPPSXXX 560
           P P  P      P  P    P+   R V   PPP        +L     PP  PPP    
Sbjct: 590 PPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVL---PPPPPPPPPPSLP 646

Query: 561 XXVXAXPPXGXVGXAXLXRPLPPGXP 638
             +   PP   +G      P PP  P
Sbjct: 647 NRLVPPPPAPGIGNKFPAPPPPPPPP 672


>06_01_0178 + 1386981-1387505
          Length = 174

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = -1

Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGGGXXGGXXXXXRRGXXAXAXXGG 476
           PG PGGRGR          GG +        GGG  GG     + G       GG
Sbjct: 15  PGQPGGRGRGGRGG-RGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGGHGG 68


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
 Frame = +3

Query: 474 PPPLXAXAXXPLLXWXXXPPFXPPP-----SXXXXXVXAXPPXGXVGXAXLXRPLPPGXP 638
           PPP       P L     PP  PPP     S       A PP        L +PLPP  P
Sbjct: 355 PPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNNNLPKPAEPPAVPTSRRRLLKPLPPEGP 414


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 709 PXSPPXXPPPPXSXXSSLXAXPLR 780
           P  PP  PPP  S  SSL   PLR
Sbjct: 21  PPPPPSTPPPASSSSSSLAKLPLR 44


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/59 (30%), Positives = 18/59 (30%)
 Frame = -1

Query: 649 GXXPGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGGGXXGGXXXXXRRGXXAXAXXGGG 473
           G   G  GG G    A      GG   T      GGG  GG       G  A    G G
Sbjct: 107 GMGSGSSGGSGSSASAPVALSSGGNYATGDGEGGGGGGGGGSNGGSGYGAGAGVGQGAG 165


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/55 (32%), Positives = 19/55 (34%)
 Frame = +3

Query: 474 PPPLXAXAXXPLLXWXXXPPFXPPPSXXXXXVXAXPPXGXVGXAXLXRPLPPGXP 638
           PPP       P   +    P  PPP          PP G V    L RPLP   P
Sbjct: 327 PPPAPPPPPPPPSRFNNTTPKPPPPPPPPE-----PPTGPVSARRLLRPLPAEGP 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,545
Number of Sequences: 37544
Number of extensions: 215854
Number of successful extensions: 1609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)