Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_K21
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 31 0.97
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 31 0.97
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.2
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 29 5.2
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 29 5.2
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.0
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 28 9.0
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 28 9.0
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 9.0
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 28 9.0
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 31.1 bits (67), Expect = 0.97
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = +3
Query: 474 PPPLXAXAXXPLLXWXXXPPFXPPPSXXXXXVXAXPPXGXVGXAXL--XRPLPPGXPGXX 647
PPP + PL+ PP P PS PP +G A + P PP PG
Sbjct: 471 PPPGPPSSLLPLINTNAPPP-PPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMA 529
Query: 648 P 650
P
Sbjct: 530 P 530
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 31.1 bits (67), Expect = 0.97
Identities = 26/92 (28%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGG----GXXGGXXXXXRRGXXAXAXXGGG 473
PG PG RG P P G GG G G G A G
Sbjct: 147 PGRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAGPRGE 206
Query: 472 XXXTNRPXXTGXP----PRG*XGXXXXPGXXG 389
+P G P PRG G PG G
Sbjct: 207 PGTEYKPGQPGRPGPPGPRGEAGPAGQPGSPG 238
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/75 (32%), Positives = 25/75 (33%)
Frame = +3
Query: 417 PXXPLGGXPVXXGRFVXXFPPPLXAXAXXPLLXWXXXPPFXPPPSXXXXXVXAXPPXGXV 596
P P GG P G PPP P + PP PPP PP G
Sbjct: 728 PPPPPGGLPPITGG-----PPPPPPPGGLPPISGGPPPP-PPPPGGCPPPPPPPPPGGFK 781
Query: 597 GXAXLXRPLPPGXPG 641
G P PP PG
Sbjct: 782 GG-----PPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/75 (32%), Positives = 25/75 (33%)
Frame = +3
Query: 417 PXXPLGGXPVXXGRFVXXFPPPLXAXAXXPLLXWXXXPPFXPPPSXXXXXVXAXPPXGXV 596
P P GG P G PPP P + PP PPP PP G
Sbjct: 728 PPPPPGGLPPITGG-----PPPPPPPGGLPPISGGPPPP-PPPPGGCPPPPPPPPPGGFK 781
Query: 597 GXAXLXRPLPPGXPG 641
G P PP PG
Sbjct: 782 GG-----PPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/75 (32%), Positives = 25/75 (33%)
Frame = +3
Query: 417 PXXPLGGXPVXXGRFVXXFPPPLXAXAXXPLLXWXXXPPFXPPPSXXXXXVXAXPPXGXV 596
P P GG P G PPP P + PP PPP PP G
Sbjct: 311 PPPPPGGLPPITGG-----PPPPPPPGGLPPISGGPPPP-PPPPGGCPPPPPPPPPGGFK 364
Query: 597 GXAXLXRPLPPGXPG 641
G P PP PG
Sbjct: 365 GG-----PPPPPPPG 374
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/74 (31%), Positives = 25/74 (33%)
Frame = +3
Query: 384 PAPXXPGXXXXPXXPLGGXPVXXGRFVXXFPPPLXAXAXXPLLXWXXXPPFXPPPSXXXX 563
PAP P P P+ G G V PPP L PP PPP
Sbjct: 533 PAPP-PVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQN--LSGAPPPPPPPPPMLGGP 589
Query: 564 XVXAXPPXGXVGXA 605
PP G +G A
Sbjct: 590 PPPPPPPGGLMGPA 603
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGG----GXXGGXXXXXRRGXXAXAXXGGG 473
PG PG +G P GG GG G G G A G
Sbjct: 146 PGRPGPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGE 205
Query: 472 XXXTNRPXXTGXP----PRG*XGXXXXPGXXG 389
+P G P PRG G PG G
Sbjct: 206 PGTEYKPGQPGRPGPQGPRGETGPAGNPGAPG 237
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/92 (27%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGG----GXXGGXXXXXRRGXXAXAXXGGG 473
PG PG +G P GG GG G G G A G
Sbjct: 140 PGCPGPKGPSGLPGSAGPAGGNGRRGPPGPVGGPGEQGPQGDAGRPGAAGRPGPAGPRGE 199
Query: 472 XXXTNRPXXTGXP----PRG*XGXXXXPGXXG 389
+P G P PRG G PG G
Sbjct: 200 PGTEYKPGQPGRPGPQGPRGETGPAGNPGAPG 231
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/84 (23%), Positives = 23/84 (27%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGGGXXGGXXXXXRRGXXAXAXXGGGXXXT 461
P PG G A P G +G GG G A G +
Sbjct: 194 PSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGPAGPPGPAGPAGPDGQS 253
Query: 460 NRPXXTGXPPRG*XGXXXXPGXXG 389
G P+G G PG G
Sbjct: 254 GSGSAGGPGPKGPPGPAGQPGSDG 277
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Frame = +3
Query: 384 PAPXXPGXXXXPXXPLGGXPVXXGRFVXXF-PPPLXAXAXXPLLXWXXXPPFXPPPS 551
P P G P P GG P F PPP P PP PPPS
Sbjct: 66 PPPVPNGFIPPPPGP-GGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPS 121
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/84 (26%), Positives = 22/84 (26%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGGGXXGGXXXXXRRGXXAXAXXGGGXXXT 461
PG PG GR A P G G GG G G
Sbjct: 173 PGRPGKPGRVGDAGPQGEPGEQGEPGIKGPPGDDSIGGTGIKGPPGPPGPRGPKGPPGSN 232
Query: 460 NRPXXTGXPPRG*XGXXXXPGXXG 389
P PP G G PG G
Sbjct: 233 GLPSQNSGPP-GPIGEMGPPGPPG 255
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 27.9 bits (59), Expect = 9.0
Identities = 22/84 (26%), Positives = 22/84 (26%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGGGXXGGXXXXXRRGXXAXAXXGGGXXXT 461
PG PG GR A P G G GG G G
Sbjct: 173 PGRPGKPGRVGDAGPQGEPGEQGEPGIKGPPGDDSIGGTGIKGPPGPPGPRGPKGPPGSN 232
Query: 460 NRPXXTGXPPRG*XGXXXXPGXXG 389
P PP G G PG G
Sbjct: 233 GLPSQNSGPP-GPIGEMGPPGPPG 255
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 27.9 bits (59), Expect = 9.0
Identities = 28/92 (30%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGG-GXXGGXXXXXRRGXXAXAXXGG--GX 470
PG PG RG P P G GG G G R G G G
Sbjct: 140 PGRPGPRGPSGLVGPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGRPGPPGPRGE 199
Query: 469 XXTN-RPXXTGXP----PRG*XGXXXXPGXXG 389
T RP G PRG G PG G
Sbjct: 200 PGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAG 231
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 27.9 bits (59), Expect = 9.0
Identities = 28/92 (30%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Frame = -1
Query: 640 PGXPGGRGRXXXAXPTXPXGGXAXTXXXXXEGG-GXXGGXXXXXRRGXXAXAXXGG--GX 470
PG PG RG P P G GG G G R G G G
Sbjct: 140 PGCPGPRGPSGLVGPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAGCPGPPGPRGE 199
Query: 469 XXTN-RPXXTGXP----PRG*XGXXXXPGXXG 389
T RP G PRG G PG G
Sbjct: 200 PGTEYRPGQAGRAGPPGPRGPPGPEGNPGGAG 231
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,085,029
Number of Sequences: 27780
Number of extensions: 141720
Number of successful extensions: 689
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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