Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_K17
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa ...    31   0.85 
U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical ...    28   6.0  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa
           synthetase familyprotein 17 protein.
          Length = 718

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 502 NCCFXVCLLAGARSHRTCSVIGTTSIKRHDTRTXSSWPPVTTFPILRTEW 353
           N CF   ++ G     TC   G T    HD  T +  PP+T   IL  EW
Sbjct: 466 NICFCCPVVQGYGLTETCG--GGTIADIHDLSTGTVGPPLTCCEILLQEW 513


>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 351 KQSTSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 187
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -3

Query: 351 KQSTSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 187
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>AL032655-6|CAA21722.1|  462|Caenorhabditis elegans Hypothetical
           protein Y6B3B.11 protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 233 PFVASDGFDENGDRCLK-YLKAPLVDQEDPR*RVLGDVDCFPFCPQDRECS 382
           P V S   D+  ++ L  Y++  LVD  +PR RVL     F  C  D EC+
Sbjct: 85  PAVISTKVDKEVEKRLPMYIQIVLVDVLEPRGRVLKHHVAFVKCSFDDECT 135


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 368 PADRMESSRRRPKHVISDPPDP 303
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,860
Number of Sequences: 27780
Number of extensions: 290377
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)