Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_K10
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 33 0.26
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.4
12_02_1174 - 26696869-26698191 30 2.4
11_01_0066 - 536281-537196,537397-537452 29 4.3
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 4.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.6
01_01_0070 - 542603-542686,542803-543441 29 5.6
06_01_0486 - 3455030-3455770 28 7.4
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.8
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 28 9.8
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPP 648
P P+ P P P P P A PP PP PP
Sbjct: 1173 PPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPP 1210
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPP 648
P P P P P P A PPF PP PP
Sbjct: 23 PPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPP 60
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPPS 651
P P+ P P P PP PP P PPS
Sbjct: 146 PQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPS 184
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 547 PAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPPS 651
PA P P PP P PP PP P S
Sbjct: 195 PAPPTPPTIARPPRPLPPASPPPPSIATPPPSPAS 229
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPP 648
P P P P P PP P P PP PP
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPPS 651
P P P P P PP P P PP PPS
Sbjct: 345 PSNAPPPPPPPPPPPPPPPPPKLNTAPK-PPPPPPPPPS 382
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPPS 651
P P P P PP P + PP PP PPS
Sbjct: 87 PKKAPPPPVTPPPVTPPPVTPPPVSPPP-ATPPPALPPS 124
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 556 PXXPXXPXPPXXXPXXXAXPPFXXXPPXXPP 648
P P P PP P + PP+ PP PP
Sbjct: 78 PYTPPTPRPPPTPPYVPSPPPY--VPPYIPP 106
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 535 PXXXPAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPP 648
P P P P PP P A PP PP PP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPP---PPPKGPP 345
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 547 PAXPXXPXXPXPPXXXPXXXAXPPFXXXPPXXPP 648
P P P P PP P PP PP PP
Sbjct: 116 PPRPPPPPPPHPPEDPPPHPPHPP--DHPPPPPP 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,194,944
Number of Sequences: 37544
Number of extensions: 117131
Number of successful extensions: 902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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