Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_K05
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.47
08_01_0059 - 394001-394708 32 0.62
06_03_0905 + 25843547-25844314 31 1.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.4
12_02_1174 - 26696869-26698191 30 1.9
11_06_0610 - 25449085-25453284 29 3.3
06_01_0486 - 3455030-3455770 29 4.4
06_01_0690 + 5033943-5034740 28 7.7
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 7.7
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 7.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP PP A A P P PP PPPPP
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/90 (24%), Positives = 23/90 (25%), Gaps = 2/90 (2%)
Frame = +1
Query: 541 PPXXXXXXDPPGXXXSXXAXXXXPGXXXPXXTXAXXPXHXSXPXXGPXPPXX--PGXXPX 714
PP P + A P P A P P PP P P
Sbjct: 291 PPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPA 350
Query: 715 XXXXXXXXPXXXXPAXPPXXXXXXGXPPPP 804
P P PP G PPPP
Sbjct: 351 KGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP PP A P P P PP PPPPP
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPP--PPKGPSPPPPPPPGGKKGGPPPPPP 382
>08_01_0059 - 394001-394708
Length = 235
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +2
Query: 650 PXTXPXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPP 802
P P PP PP A P P P PP PPPP
Sbjct: 7 PRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPP 57
>06_03_0905 + 25843547-25844314
Length = 255
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/88 (23%), Positives = 23/88 (26%)
Frame = +2
Query: 542 PXXXPXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXP 721
P P P G PP + P T P PP PP
Sbjct: 82 PPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPVVVGPPVTYPTPPVTTPPVVVGPPVTYPT 141
Query: 722 XXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P P + P PPPPP
Sbjct: 142 P--PVTYPTPPVTYPTPPTTTPCPPPPP 167
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/65 (26%), Positives = 17/65 (26%)
Frame = +1
Query: 610 PGXXXPXXTXAXXPXHXSXPXXGPXPPXXPGXXPXXXXXXXXXPXXXXPAXPPXXXXXXG 789
P P P P P PP PG P P PP
Sbjct: 31 PPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYY 90
Query: 790 XPPPP 804
PPPP
Sbjct: 91 QPPPP 95
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/85 (25%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Frame = +2
Query: 554 PXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXPXXXP 733
P TP P PP + P P PP LPP P
Sbjct: 111 PEFKTPPAL-SPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPS 169
Query: 734 XNXP-XXXLXXPPXXXXXXXPPPPP 805
P PP PPPPP
Sbjct: 170 VKPPVVQPKPQPPPSLQPPSPPPPP 194
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/55 (27%), Positives = 16/55 (29%)
Frame = +1
Query: 640 AXXPXHXSXPXXGPXPPXXPGXXPXXXXXXXXXPXXXXPAXPPXXXXXXGXPPPP 804
A P + P P PP P P P PP PPPP
Sbjct: 108 ATSPEFKTPPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPP 162
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/92 (23%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
Frame = +2
Query: 542 PXXXPXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXP 721
P P +P PP L P + P PP PP A P
Sbjct: 1105 PPSVPKASSPPTEKSLPPPATVSLPPPTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPP 1164
Query: 722 XXXPXNX-----PXXXLXXPPXXXXXXXPPPP 802
P P + PP PPPP
Sbjct: 1165 IKSPPPPAPVISPPPPVKSPPPPAPVILPPPP 1196
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/92 (23%), Positives = 23/92 (25%), Gaps = 5/92 (5%)
Frame = +2
Query: 542 PXXXPXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXP 721
P P P P PP P P PP PP A P
Sbjct: 1137 PPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPP 1196
Query: 722 XXXPXNX-----PXXXLXXPPXXXXXXXPPPP 802
P P + PP PPPP
Sbjct: 1197 VKSPPPPAPVISPPPPVKSPPPPAPVILPPPP 1228
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/92 (23%), Positives = 23/92 (25%), Gaps = 5/92 (5%)
Frame = +2
Query: 542 PXXXPXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXP 721
P P P P PP P P PP PP A P
Sbjct: 1153 PPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPP 1212
Query: 722 XXXPXNX-----PXXXLXXPPXXXXXXXPPPP 802
P P + PP PPPP
Sbjct: 1213 VKSPPPPAPVILPPPPVKSPPPPAPVISPPPP 1244
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Frame = +2
Query: 650 PXTXPXP-PXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P T P P P PP P P P PP PP PP
Sbjct: 78 PYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPP 130
>06_01_0690 + 5033943-5034740
Length = 265
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -1
Query: 804 GGGGGXXXXXXXGGXXRXXXGXXXGXXXGXXXXXAXAXXGGRXXGGXGXVXG 649
GGGGG G G G G A GG+ GG G G
Sbjct: 193 GGGGGGGGGQNGGSGYGSGSGSGYGQAGGYGPYGGYAQAGGQGGGGGGGQSG 244
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Frame = +1
Query: 667 PXXGPXPPXXPGXXPXXXXXXXXXPXXXXPAXP-PXXXXXXGXPPPP 804
P GP PP P P P P P G PPPP
Sbjct: 278 PPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPP 324
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/51 (27%), Positives = 15/51 (29%)
Frame = +1
Query: 649 PXHXSXPXXGPXPPXXPGXXPXXXXXXXXXPXXXXPAXPPXXXXXXGXPPP 801
P S P PP P P P + PP G PPP
Sbjct: 1150 PPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPPP 1200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,333,667
Number of Sequences: 37544
Number of extensions: 283235
Number of successful extensions: 1455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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