Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_K05
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.32
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.32
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 33 0.32
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.3
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.0
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 4.0
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +1
Query: 610 PGXXXPXXTXAXXPXHXSXPXXGPXPPXXPGXXPXXXXXXXXXP--XXXXPAXPPXXXXX 783
P P + P P P PP PG P P P PP
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 784 XGXPPPP 804
G PPPP
Sbjct: 345 GGMPPPP 351
Score = 30.7 bits (66), Expect = 1.3
Identities = 37/146 (25%), Positives = 38/146 (26%)
Frame = +2
Query: 368 PPXXXTPXRTPXXPXAXATPXXXXXXXXXLDTDXCP*YTX*PPXXXXXXWSXGRXGXXPX 547
PP TP P P TP + P PP G G P
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP-P-----PPPPGRTPGPPGMPGMPPP 319
Query: 548 XXPXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXPXX 727
P P G G PP P P PP PP A P
Sbjct: 320 PPPSRFGPPGMGGMPPPPPPG----------MRYPGGMPPPP---PPRYPSAGPGMYPPP 366
Query: 728 XPXNXPXXXLXXPPXXXXXXXPPPPP 805
P P PP PPPPP
Sbjct: 367 PPSRPP-----APPSGHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +1
Query: 610 PGXXXPXXTXAXXPXHXSXPXXGPXPPXXPGXXPXXXXXXXXXP--XXXXPAXPPXXXXX 783
P P + P P P PP PG P P P PP
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 784 XGXPPPP 804
G PPPP
Sbjct: 355 GGMPPPP 361
Score = 30.7 bits (66), Expect = 1.3
Identities = 37/146 (25%), Positives = 38/146 (26%)
Frame = +2
Query: 368 PPXXXTPXRTPXXPXAXATPXXXXXXXXXLDTDXCP*YTX*PPXXXXXXWSXGRXGXXPX 547
PP TP P P TP + P PP G G P
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPP-P-----PPPPGRTPGPPGMPGMPPP 329
Query: 548 XXPXXXTPXGXXGPXPPXXXXXGXXXXXKLWXXXPXTXPXPPXXLPPXXAXAXXXXXPXX 727
P P G G PP P P PP PP A P
Sbjct: 330 PPPSRFGPPGMGGMPPPPPPG----------MRYPGGMPPPP---PPRYPSAGPGMYPPP 376
Query: 728 XPXNXPXXXLXXPPXXXXXXXPPPPP 805
P P PP PPPPP
Sbjct: 377 PPSRPP-----APPSGHGMIPPPPPP 397
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -1
Query: 804 GGGGGXXXXXXXGGXXRXXXGXXXGXXXGXXXXXAXAXXGGRXXGGXG 661
GGGGG GG R G G G GGR GG G
Sbjct: 130 GGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGG 177
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP LPP + P P P PP PPPPP
Sbjct: 745 PPPPGGLPPI---SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP LPP P P PP PPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP LPP + P P P PP PPPPP
Sbjct: 745 PPPPGGLPPI---SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP LPP P P PP PPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP LPP + P P P PP PPPPP
Sbjct: 328 PPPPGGLPPI---SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 662 PXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P PP LPP P P PP PPPPP
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 668 PPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
PP PP P P P PP PPPPP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +2
Query: 650 PXTXPXPPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
P P PP PP P P PP PPPPP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 668 PPXXLPPXXAXAXXXXXPXXXPXNXPXXXLXXPPXXXXXXXPPPPP 805
PP LPP A P P P PP PPPPP
Sbjct: 85 PPAPLPPPPPPAS----PCCGPSPVPAPCCPPPPAPAAPCCPPPPP 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,099,400
Number of Sequences: 27780
Number of extensions: 178109
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -