Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_K04
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 626 PXXXTXPXXAXXLXSPXXXPPPXXXXXXGXSPXXPPXPS 742
           P     P  A  +  P   PPP      G  P  PP P+
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/86 (23%), Positives = 21/86 (24%), Gaps = 1/86 (1%)
 Frame = +1

Query: 547 AXXXPPXXPXPXXXHPPXPPXPSXXXXXXXNPPXXXXXPXXPPLXPP-PXXXXXXXEXPX 723
           A   PP  P P        P  S        PP     P  P   PP P       +   
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAA 179

Query: 724 XXXXPIXXXXXPXXXPXYXXXXPXPP 801
               P      P   P      P PP
Sbjct: 180 PVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +1

Query: 562  PXXPXPXXXHPPXPPXPSXXXXXXXNPPXXXXXPXXPPLXPPP 690
            P    P     P PP P         PP     P  PP  PPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPP---PPSAPPMPAGPPSAPPP 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,843
Number of Sequences: 5004
Number of extensions: 15237
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)