Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J24
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       36   0.032
07_03_1136 + 24218601-24218734,24218769-24219906                       29   2.7  
02_04_0168 - 20518522-20518970,20519069-20519270                       28   8.4  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = +1

Query: 400 PXXSPGXGGGKTXKXXXFFFFXPPPPFXXXXXGKXXWXGGXKXPPPXFXGGG 555
           P  S   GGG         +  PPPP+     G     GG   PPP   GGG
Sbjct: 71  PPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGG 122



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = +2

Query: 401 PXFPXGXGGGKPXKXPXFFFFXXPPXXXXXXXGKXXGXGGXKXPPPXXXGGG 556
           P +P G GGG         +   PP       G   G GG   PPP   GGG
Sbjct: 73  PSYPSGGGGG--GGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPP-TGGGG 121


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +1

Query: 316 GLXGXKPXPGGGXXPFKXFXGGGXKKXXPXXSPGXGGG 429
           G  G  P  GGG        GGG     P  +PG GGG
Sbjct: 167 GALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGG 204


>02_04_0168 - 20518522-20518970,20519069-20519270
          Length = 216

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 203 GSWFFGAPPCSRRMVCPGTKMSG 135
           GSW FG PP SR +    T + G
Sbjct: 181 GSWIFGPPPPSRSVAAATTTLLG 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,923
Number of Sequences: 37544
Number of extensions: 316148
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)