Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP16_T7_J22
         (1201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           31   1.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   4.2  
07_03_1382 - 26170563-26170631,26171151-26171843                       24   6.7  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
           G G  PPPP     + GGG PPP
Sbjct: 365 GPGPGPPPPPGAAGRGGGGPPPP 387


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
           G  PPPPP    KK G   PPP
Sbjct: 361 GPSPPPPPPPGGKKGGPPPPPP 382



 Score = 29.1 bits (62), Expect = 7.3
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
           G   PPPPP   KK   GG PPP
Sbjct: 361 GPSPPPPPPPGGKK---GGPPPP 380



 Score = 23.8 bits (49), Expect(2) = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 818 PPPPPPP 838
           PPPPPPP
Sbjct: 326 PPPPPPP 332



 Score = 23.8 bits (49), Expect(2) = 6.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 821 PPPPPPP 841
           PPPPPPP
Sbjct: 364 PPPPPPP 370


>07_03_1382 - 26170563-26170631,26171151-26171843
          Length = 253

 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 818 PPPPPPP 838
           PPPPPPP
Sbjct: 184 PPPPPPP 190



 Score = 23.8 bits (49), Expect(2) = 6.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 821 PPPPPPP 841
           PPPPPPP
Sbjct: 200 PPPPPPP 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,533
Number of Sequences: 37544
Number of extensions: 356551
Number of successful extensions: 28832
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8995
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)