Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP16_T7_J22
(1201 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.70
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.70
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.70
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.70
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.5
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 29 6.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.5
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 6.5
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 6.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.5
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.70
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 485 PPPPPXXXKKKXGGGXPPP 541
PPPPP K + GG PPP
Sbjct: 122 PPPPPPPRKSRAGGSSPPP 140
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.70
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPP 761
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPP 745
Score = 31.1 bits (67), Expect = 1.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPP 787
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPP 746
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.70
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPP 761
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPP 745
Score = 31.1 bits (67), Expect = 1.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPP 787
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPP 746
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPP 762
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.70
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPP 344
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPP 328
Score = 31.1 bits (67), Expect = 1.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPP 370
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPP 329
Score = 30.3 bits (65), Expect = 2.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPP 345
Score = 29.1 bits (62), Expect = 6.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP GG PPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPP 371
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP + G PPP
Sbjct: 331 GGMPPPPPPGMRYPGGMPPPPP 352
Score = 28.7 bits (61), Expect = 8.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP G PPP
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPP 366
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGG 529
GGG PPPPP GGG
Sbjct: 32 GGGCPPPPPPMCSGGCGGG 50
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP + G PPP
Sbjct: 341 GGMPPPPPPGMRYPGGMPPPPP 362
Score = 28.7 bits (61), Expect = 8.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 476 GGXPPPPPXXXKKKXGGGXPPP 541
GG PPPPP G PPP
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPP 376
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPP 538
GGG PPPP ++ GG PP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPP 696
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPP 538
GGG PPPP ++ GG PP
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPP 696
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
G PPPPP G G PPP
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPP 257
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
G PPPPP G G PPP
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPP 278
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 473 GGGXPPPPPXXXKKKXGGGXPPP 541
G PPPPP G G PPP
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPP 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,538,862
Number of Sequences: 27780
Number of extensions: 169073
Number of successful extensions: 6147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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